Transcript : dd_Smed_v6_36_0_1 S. mediterranea
Length  1057     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066157.1, clone H.6.10a(T3) unknown mRNA sequence
AY068085.1, clone HB.23.3d unknown mRNA sequence
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* Evidence
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Lists
This Contig is in 2 lists:
All contigs in dd_Smed (41745)
All contigs for Schmidtea mediterranea (241406)

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_732310.1 Drosophila melanogaster CG31196 gene product from transcript CG31196-RD 2.0E-117 131-862 732 1
NP_006752.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 3.0E-114 131-841 711 1
XP_008214297.1 Nasonia vitripennis 14-3-3 protein epsilon 1.0E-120 131-883 753 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 659-736 78 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 3.8E-160 131-865 735 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 740-826 87 1
G3DSA:1.20.190.20 GENE3D IPR023410   9.2E-110 131-820 690 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 236-322 87 1
SM00101 SMART IPR023410 14-3-3 homologues 1.6E-150 140-859 720 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 578-655 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 380-451 72 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 473-538 66 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 767-823 57 1
SSF48445 SSF IPR023410 14-3-3 protein 2.88E-98 137-826 690 1
PF00244 PFAM IPR023410 14-3-3 protein 8.8E-109 140-838 699 1
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 254-283 30 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
131-868 738 1
190-318 129 -1
931-1056 126 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 6.2E-109 2 364.0 0.67644274 144-858 715 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)