Contig : dd_Smed_v6_36_0_1 S. mediterranea
Id  dd_Smed_v6_36_0_1 Length  1057    Open in Genome Browser
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This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (245295)
All contigs in dd_Smed (41745)

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_732310.1 Drosophila melanogaster CG31196 gene product from transcript CG31196-RD 2.0E-117 131-862 732 1
NP_006752.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 3.0E-114 131-841 711 1
XP_008214297.1 Nasonia vitripennis 14-3-3 protein epsilon 1.0E-120 131-883 753 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 659-736 78 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 3.8E-160 131-865 735 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 740-826 87 1
G3DSA:1.20.190.20 GENE3D IPR023410   9.2E-110 131-820 690 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 236-322 87 1
SM00101 SMART IPR023410 14-3-3 homologues 1.6E-150 140-859 720 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 578-655 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 380-451 72 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 1.8E-82 473-538 66 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 767-823 57 1
SSF48445 SSF IPR023410 14-3-3 protein 2.88E-98 137-826 690 1
PF00244 PFAM IPR023410 14-3-3 protein 8.8E-109 140-838 699 1
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 254-283 30 1

3 ORFs

Contig Location Length Strand Sequence
131-868 738 1
190-318 129 -1
931-1056 126 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 6.2E-109 2 364.0 0.67644274 144-858 715 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)