Contig : dd_Smed_v6_364_0_6 S. mediterranea

Id  dd_Smed_v6_364_0_6 Length  2407    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 419-1615 1197 1
NP_476616.1 Drosophila melanogaster Lamin 1.0E-21 509-1633 1125 1
XP_005099118.1 Aplysia californica microtubule-associated protein futsch-like 6.0E-70 386-1612 1227 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 2.0E-111 320-2281 1962 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.3E-59 542-1600 1059 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.16E-26 1940-2275 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.66E-11 1391-1600 210 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.2E-26 1913-2275 363 1
G3DSA:1.20.5.170 GENE3D   1.4E-13 1361-1600 240 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 542-646 105 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 2.0E-111 320-2281 1962 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1955-2257 303 1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1754-1804 51 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1670-1744 75 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1829-1876 48 -1

6 ORFs

Contig Location Length Strand Sequence
257-2290 2034 1
1492-2106 615 -1
1200-1328 129 1
1-126 126 -1
1024-1146 123 -1
53-172 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 4.9E-138 2 461.4 0.723307 537-2277 1741 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)