Transcript : dd_Smed_v6_364_0_6 S. mediterranea

Length  2407     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 419-1615 1197 1
NP_476616.1 Drosophila melanogaster Lamin 1.0E-21 509-1633 1125 1
XP_005099118.1 Aplysia californica nestin-like 6.0E-70 386-1612 1227 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 2.0E-111 320-2281 1962 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.3E-59 542-1600 1059 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.16E-26 1940-2275 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.66E-11 1391-1600 210 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.2E-26 1913-2275 363 1
G3DSA:1.20.5.170 GENE3D   1.4E-13 1361-1600 240 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 542-646 105 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 2.0E-111 320-2281 1962 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1955-2257 303 1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1754-1804 51 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1670-1744 75 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1829-1876 48 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
257-2290 2034 1
1492-2106 615 -1
1200-1328 129 1
1-126 126 -1
1024-1146 123 -1
53-172 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 4.9E-138 2 461.4 0.723307 537-2277 1741 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)