Contig : dd_Smed_v6_364_0_5 S. mediterranea

Id  dd_Smed_v6_364_0_5 Length  2419    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 419-1615 1197 1
NP_523742.2 Drosophila melanogaster Lamin C 1.0E-21 452-1633 1182 1
XP_005099118.1 Aplysia californica microtubule-associated protein futsch-like 8.0E-70 386-1612 1227 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 3.84E-11 1391-1600 210 1
G3DSA:1.20.5.170 GENE3D   1.5E-13 1361-1600 240 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 8.3E-112 320-2293 1974 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 542-646 105 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.4E-59 542-1600 1059 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.3E-26 1925-2287 363 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1967-2269 303 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.18E-26 1952-2287 336 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 8.3E-112 320-2293 1974 1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1841-1888 48 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1682-1756 75 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1766-1816 51 -1

6 ORFs

Contig Location Length Strand Sequence
257-2302 2046 1
1492-2118 627 -1
1200-1328 129 1
1-126 126 -1
1024-1146 123 -1
53-172 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 1.7E-138 2 462.9 0.72467965 537-2289 1753 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)