Transcript : dd_Smed_v6_364_0_5 S. mediterranea

Length  2419     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 419-1615 1197 1
NP_523742.2 Drosophila melanogaster Lamin C 1.0E-21 452-1633 1182 1
XP_005099118.1 Aplysia californica nestin-like 8.0E-70 386-1612 1227 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 3.84E-11 1391-1600 210 1
G3DSA:1.20.5.170 GENE3D   1.5E-13 1361-1600 240 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 8.3E-112 320-2293 1974 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 542-646 105 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.4E-59 542-1600 1059 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.3E-26 1925-2287 363 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1967-2269 303 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.18E-26 1952-2287 336 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 8.3E-112 320-2293 1974 1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1841-1888 48 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1682-1756 75 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1766-1816 51 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
257-2302 2046 1
1492-2118 627 -1
1200-1328 129 1
1-126 126 -1
1024-1146 123 -1
53-172 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 1.7E-138 2 462.9 0.72467965 537-2289 1753 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)