Contig : dd_Smed_v6_364_0_4 S. mediterranea

Id  dd_Smed_v6_364_0_4 Length  2422    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 4.0E-22 434-1630 1197 1
NP_476616.1 Drosophila melanogaster Lamin 2.0E-21 524-1648 1125 1
XP_005099118.1 Aplysia californica microtubule-associated protein futsch-like 2.0E-68 416-1627 1212 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 557-661 105 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 1.1E-111 521-2296 1776 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.3E-26 1928-2290 363 1
G3DSA:1.20.5.170 GENE3D   1.5E-13 1376-1615 240 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.18E-26 1955-2290 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.84E-11 1406-1615 210 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.4E-59 557-1615 1059 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1970-2272 303 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 1.1E-111 521-2296 1776 1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1769-1819 51 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1685-1759 75 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1844-1891 48 -1

6 ORFs

Contig Location Length Strand Sequence
257-2305 2049 1
1507-2121 615 -1
1215-1343 129 1
1-126 126 -1
1039-1161 123 -1
53-172 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 5.0E-138 2 461.4 0.7188274 552-2292 1741 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)