Transcript : dd_Smed_v6_364_0_4 S. mediterranea

Length  2422     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 4.0E-22 434-1630 1197 1
NP_476616.1 Drosophila melanogaster Lamin 2.0E-21 524-1648 1125 1
XP_005099118.1 Aplysia californica nestin-like 2.0E-68 416-1627 1212 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 557-661 105 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 1.1E-111 521-2296 1776 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.3E-26 1928-2290 363 1
G3DSA:1.20.5.170 GENE3D   1.5E-13 1376-1615 240 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.18E-26 1955-2290 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.84E-11 1406-1615 210 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.4E-59 557-1615 1059 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.3E-7 1970-2272 303 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 1.1E-111 521-2296 1776 1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1769-1819 51 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1685-1759 75 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1844-1891 48 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
257-2305 2049 1
1507-2121 615 -1
1215-1343 129 1
1-126 126 -1
1039-1161 123 -1
53-172 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 5.0E-138 2 461.4 0.7188274 552-2292 1741 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)