Transcript : dd_Smed_v6_364_0_3 S. mediterranea

Length  2434     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 434-1630 1197 1
NP_523742.2 Drosophila melanogaster Lamin C 2.0E-21 467-1639 1173 1
XP_005099118.1 Aplysia californica nestin-like 3.0E-68 416-1627 1212 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.60.40.1260 GENE3D IPR001322   4.3E-26 1940-2302 363 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.19E-26 1967-2302 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.84E-11 1406-1615 210 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 3.3E-112 521-2308 1788 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.73E-10 557-661 105 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.4E-7 1982-2284 303 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.6E-59 557-1615 1059 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 3.3E-112 521-2308 1788 1
G3DSA:1.20.5.170 GENE3D   1.5E-13 1376-1615 240 1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1781-1831 51 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1856-1903 48 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1697-1771 75 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
257-2317 2061 1
1507-2133 627 -1
1215-1343 129 1
1-126 126 -1
1039-1161 123 -1
53-172 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 1.7E-138 2 462.9 0.72021365 552-2304 1753 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)