Contig : dd_Smed_v6_364_0_2 S. mediterranea

Id  dd_Smed_v6_364_0_2 Length  2466    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 559-1674 1116 1
XP_005099118.1 Aplysia californica microtubule-associated protein futsch-like 5.0E-68 568-1671 1104 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 1.0E-51 565-1671 1107 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 3.4E-113 292-2340 2049 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.7E-59 601-1659 1059 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.7E-7 2014-2316 303 1
G3DSA:1.20.5.170 GENE3D   5.2E-13 1420-1659 240 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.7E-26 1972-2334 363 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.88E-10 601-705 105 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.29E-26 1999-2334 336 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 3.4E-113 292-2340 2049 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.66E-11 1450-1659 210 1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1811-1861 51 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1727-1801 75 -1
PR01217 PRINTS Proline rich extensin signature 2.2E-10 1886-1933 48 -1

5 ORFs

Contig Location Length Strand Sequence
145-2349 2205 1
1551-2165 615 -1
69-359 291 -1
1259-1387 129 1
1083-1205 123 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313938 0.0052 1 14.4 0.4164639 447-1473 1027 1
TF101181 5.3E-138 1 461.3 0.70600164 597-2337 1741 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)