Transcript : dd_Smed_v6_364_0_1 S. mediterranea

Length  2478     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068722.1, clone H.24.6b unknown mRNA sequence
AY068195.1, clone H.24.6b(T3) unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 559-1674 1116 1
XP_005099118.1 Aplysia californica nestin-like 7.0E-68 568-1671 1104 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 1.0E-51 565-1671 1107 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 3.66E-11 1450-1659 210 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.7E-7 2026-2328 303 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 1.6E-113 292-2352 2061 1
G3DSA:1.20.5.170 GENE3D   5.2E-13 1420-1659 240 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.31E-26 2011-2346 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.88E-10 601-705 105 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.7E-59 601-1659 1059 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 1.6E-113 292-2352 2061 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.7E-26 1984-2346 363 1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1739-1813 75 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1823-1873 51 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1898-1945 48 -1

Genomics

Predicted Gene Displayer

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Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
145-2361 2217 1
1551-2177 627 -1
69-359 291 -1
1259-1387 129 1
1083-1205 123 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313938 0.0034 1 15.1 0.41444713 447-1473 1027 1
TF101181 1.8E-138 1 462.8 0.70742536 597-2349 1753 1
TF344108 1.0E-11 4 41.7 0.69087976 210-1923 1714 -1

Expression Information

Planmine Rnai Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)