Contig : dd_Smed_v6_364_0_1 S. mediterranea

Id  dd_Smed_v6_364_0_1 Length  2478    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006532285.1 Mus musculus glial fibrillary acidic protein 3.0E-22 559-1674 1116 1
XP_005099118.1 Aplysia californica microtubule-associated protein futsch-like 7.0E-68 568-1671 1104 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 1.0E-51 565-1671 1107 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 3.66E-11 1450-1659 210 1
PF00932 PFAM IPR001322 Lamin Tail Domain 3.7E-7 2026-2328 303 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 1.6E-113 292-2352 2061 1
G3DSA:1.20.5.170 GENE3D   5.2E-13 1420-1659 240 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 1.31E-26 2011-2346 336 1
SSF64593 SSF Intermediate filament protein, coiled coil region 1.88E-10 601-705 105 1
PF00038 PFAM IPR001664 Intermediate filament protein 8.7E-59 601-1659 1059 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 1.6E-113 292-2352 2061 1
G3DSA:2.60.40.1260 GENE3D IPR001322   4.7E-26 1984-2346 363 1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1739-1813 75 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1823-1873 51 -1
PR01217 PRINTS Proline rich extensin signature 6.9E-11 1898-1945 48 -1

5 ORFs

Contig Location Length Strand Sequence
145-2361 2217 1
1551-2177 627 -1
69-359 291 -1
1259-1387 129 1
1083-1205 123 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313938 0.0034 1 15.1 0.41444713 447-1473 1027 1
TF101181 1.8E-138 1 462.8 0.70742536 597-2349 1753 1
TF344108 1.0E-11 4 41.7 0.69087976 210-1923 1714 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)