Transcript : dd_Smed_v6_3596_0_1 S. mediterranea

Length  1171     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KT163636.1, slc25a-18 (slc25a-18) mRNA - complete cds
EST: AY068141.1, clone HB.14.10f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_077173.1 Mus musculus solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 8.0E-137 121-990 870 1
NP_003553.2 Homo sapiens solute carrier family 25 member 11 1.0E-136 121-990 870 1
XP_002128286.1 Ciona intestinalis mitochondrial 2-oxoglutarate/malate carrier protein-like 3.0E-146 118-984 867 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24089 PANTHER FAMILY NOT NAMED 5.9E-172 94-984 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 26.825 709-975 267 1
PTHR24089:SF86 PANTHER MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEI 5.9E-172 94-984 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 25.516 409-681 273 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 3.2E-18 409-687 279 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 7.0E-21 712-981 270 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.4E-20 124-393 270 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 25.645 118-384 267 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 6.1E-82 121-972 852 1
SSF103506 SSF IPR023395 Mitochondrial carrier 4.18E-78 121-966 846 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
97-1035 939 1
703-876 174 -1
1059-1169 111 -1
889-996 108 -1
15-119 105 -1

6 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354262 5.2E-202 1 671.8 0.7412468 120-987 868 1
TF313209 7.8E-37 1 126.7 0.74893254 129-1005 877 1
TF323211 1.4E-94 1 316.6 0.7309992 132-987 856 1
TF354328 1.6E-72 1 243.5 0.6900085 135-942 808 1
TF312920 3.5E-100 1 335.2 0.7028181 144-966 823 1
TF332793 2.1E-33 1 114.6 0.4850555 402-969 568 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)