Contig : dd_Smed_v6_3596_0_1 S. mediterranea

Id  dd_Smed_v6_3596_0_1 Length  1171    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_077173.1 Mus musculus solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 8.0E-137 121-990 870 1
NP_003553.2 Homo sapiens solute carrier family 25 (mitochondrial carrier. oxoglutarate carrier), member 11 1.0E-136 121-990 870 1
XP_002128286.1 Ciona intestinalis mitochondrial 2-oxoglutarate/malate carrier protein-like 3.0E-146 118-984 867 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR24089 PANTHER FAMILY NOT NAMED 5.9E-172 94-984 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 26.825 709-975 267 1
PTHR24089:SF86 PANTHER MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEI 5.9E-172 94-984 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 25.516 409-681 273 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 3.2E-18 409-687 279 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 7.0E-21 712-981 270 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.4E-20 124-393 270 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 25.645 118-384 267 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 6.1E-82 121-972 852 1
SSF103506 SSF IPR023395 Mitochondrial carrier 4.18E-78 121-966 846 1

5 ORFs

Contig Location Length Strand Sequence
97-1035 939 1
703-876 174 -1
1059-1169 111 -1
889-996 108 -1
15-119 105 -1

6 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354262 5.2E-202 1 671.8 0.7412468 120-987 868 1
TF313209 7.8E-37 1 126.7 0.74893254 129-1005 877 1
TF323211 1.4E-94 1 316.6 0.7309992 132-987 856 1
TF354328 1.6E-72 1 243.5 0.6900085 135-942 808 1
TF312920 3.5E-100 1 335.2 0.7028181 144-966 823 1
TF332793 2.1E-33 1 114.6 0.4850555 402-969 568 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)