Contig : dd_Smed_v6_354_0_1 S. mediterranea

Id  dd_Smed_v6_354_0_1 Length  1007    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_062767.3 Mus musculus tetraspanin 3 9.0E-12 283-681 399 1
NP_005715.1 Homo sapiens tetraspanin 3 3.0E-11 277-681 405 1
XP_004468226.1 Dasypus novemcinctus tetraspanin 3 8.0E-13 277-687 411 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR19282:SF170 PANTHER RE39068P 2.5E-55 55-927 873 1
PF00335 PFAM IPR018499 Tetraspanin family 6.7E-42 100-912 813 1
PR00259 PRINTS IPR000301 Transmembrane four family signature 4.1E-33 352-435 84 1
PR00259 PRINTS IPR000301 Transmembrane four family signature 4.1E-33 844-921 78 1
PR00259 PRINTS IPR000301 Transmembrane four family signature 4.1E-33 109-177 69 1
SSF48652 SSF IPR008952 Tetraspanin 1.44E-6 454-696 243 1
PTHR19282 PANTHER TETRASPANIN 2.5E-55 55-927 873 1
PR00259 PRINTS IPR000301 Transmembrane four family signature 4.1E-33 271-348 78 1
SSF48652 SSF IPR008952 Tetraspanin 1.44E-6 787-837 51 1

4 ORFs

Contig Location Length Strand Sequence
82-930 849 1
72-278 207 -1
336-455 120 1
259-363 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352895 2.7E-40 1 137.8 0.79642504 108-909 802 1
TF352891 3.6E-30 1 104.0 0.6236346 282-909 628 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)