Transcript : dd_Smed_v6_3517_0_1 S. mediterranea

Length  748     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005800.3 Homo sapiens peroxiredoxin 2 4.0E-83 142-702 561 1
NP_035693.3 Mus musculus peroxiredoxin 2 3.0E-82 115-702 588 1
XP_003136925.1 Loa loa thioredoxin peroxidase 1.0E-88 106-693 588 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 5.5E-78 133-690 558 1
PTHR10681 PANTHER THIOREDOXIN PEROXIDASE 1.2E-111 106-699 594 1
PF00578 PFAM IPR000866 AhpC/TSA family 6.1E-37 136-525 390 1
PTHR10681:SF101 PANTHER PEROXIREDOXIN-4 1.2E-111 106-699 594 1
SSF52833 SSF IPR012336 Thioredoxin-like 4.08E-68 124-690 567 1
PF10417 PFAM IPR019479 C-terminal domain of 1-Cys peroxiredoxin 1.1E-11 589-693 105 1
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 16.903 124-597 474 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
85-702 618 1
577-747 171 -1
587-709 123 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105181 1.3E-127 1 425.6 0.7513369 138-699 562 1
TF105183 3.3E-23 1 81.0 0.618984 216-678 463 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)