Contig : dd_Smed_v6_3517_0_1 S. mediterranea

Id  dd_Smed_v6_3517_0_1 Length  748    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005800.3 Homo sapiens peroxiredoxin 2 4.0E-83 142-702 561 1
NP_035693.3 Mus musculus peroxiredoxin 2 3.0E-82 115-702 588 1
XP_003136925.1 Loa loa thioredoxin peroxidase 1.0E-88 106-693 588 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 5.5E-78 133-690 558 1
PTHR10681 PANTHER THIOREDOXIN PEROXIDASE 1.2E-111 106-699 594 1
PF00578 PFAM IPR000866 AhpC/TSA family 6.1E-37 136-525 390 1
PTHR10681:SF101 PANTHER PEROXIREDOXIN-4 1.2E-111 106-699 594 1
SSF52833 SSF IPR012336 Thioredoxin-like 4.08E-68 124-690 567 1
PF10417 PFAM IPR019479 C-terminal domain of 1-Cys peroxiredoxin 1.1E-11 589-693 105 1
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 16.903 124-597 474 1

3 ORFs

Contig Location Length Strand Sequence
85-702 618 1
577-747 171 -1
587-709 123 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105181 1.3E-127 1 425.6 0.7513369 138-699 562 1
TF105183 3.3E-23 1 81.0 0.618984 216-678 463 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)