Transcript : dd_Smed_v6_350_0_1 S. mediterranea

Length  751     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067197.1, clone H.73.10f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648514.1 Drosophila melanogaster Ribosomal protein L10Ab 9.0E-95 80-727 648 1
XP_003383401.1 Amphimedon queenslandica 60S ribosomal protein L10a-like 7.0E-102 77-727 651 1
XP_008108002.1 Anolis carolinensis ribosomal protein L10a 3.0E-101 77-727 651 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.190.20 GENE3D IPR016094   1.1E-45 95-256 162 1
G3DSA:3.30.190.20 GENE3D IPR016094   1.1E-45 533-724 192 1
PTHR23105:SF31 PANTHER 60S RIBOSOMAL PROTEIN L10A 1.4E-115 77-724 648 1
PF00687 PFAM IPR028364 Ribosomal protein L1p/L10e family 1.2E-48 122-706 585 1
SSF56808 SSF IPR023674 Ribosomal protein L1 4.97E-63 110-724 615 1
G3DSA:3.40.50.790 GENE3D IPR016095   1.1E-37 263-529 267 1
PTHR23105 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 1.4E-115 77-724 648 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
77-727 651 1
208-321 114 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300791 7.2E-82 2 272.5 0.61651134 264-726 463 1
TF354254 5.5E-12 2 44.0 0.424767 381-699 319 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)