Transcript : dd_Smed_v6_34_0_2 S. mediterranea

Length  251     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_061828.1 Homo sapiens ubiquitin B 3.0E-49 1-249 249 1
XP_004934049.1 Bombyx mori polyubiquitin-like 1.0E-51 1-249 249 1
XP_006220138.1 Vicugna pacos polyubiquitin-A-like 1.0E-51 1-249 249 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10666 PANTHER UBIQUITIN 2.3E-71 1-246 246 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 13.38 133-249 117 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 20.501 1-129 129 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.2E-27 1-132 132 1
PR00348 PRINTS IPR019956 Ubiquitin signature 1.8E-13 163-222 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 1.8E-13 226-249 24 1
PF00240 PFAM IPR000626 Ubiquitin family 2.0E-12 148-246 99 1
PF00240 PFAM IPR000626 Ubiquitin family 4.3E-20 1-123 123 1
SSF54236 SSF IPR029071 Ubiquitin-like 4.63E-19 1-129 129 1
SM00213 SMART IPR000626 Ubiquitin homologues 0.55 1-117 117 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2 133-246 114 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.1E-13 130-246 117 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.7E-26 136-246 111 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
1-249 249 1
1-249 249 -1
81-248 168 -1

26 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 7.5E-65 1 218.1 0.98406374 3-249 247 1
TF300820 3.6E-61 1 206.4 0.98406374 3-249 247 1
TF352129 1.5E-28 1 99.6 0.5179283 3-132 130 1
TF300072 4.8E-26 1 90.3 0.52988046 3-135 133 1
TF300036 3.1E-23 1 82.3 0.52988046 3-135 133 1
TF338379 1.3E-21 1 75.7 0.5179283 3-132 130 1
TF354229 5.2E-10 1 37.2 0.42231077 3-108 106 1
TF300201 4.3E-14 1 50.8 0.48207173 6-126 121 1
TF354228 3.5E-11 1 42.0 0.45816734 6-120 115 1
TF313779 4.0E-10 1 39.0 0.5059761 6-132 127 1
TF329607 2.6E-9 1 34.6 0.5059761 6-132 127 1
TF327176 2.2E-7 1 28.9 0.43426296 6-114 109 1
TF314529 1.2E-10 1 39.5 0.47011954 9-126 118 1
TF328437 1.3E-8 1 32.1 0.44621515 9-120 112 1
TF106434 4.3E-9 1 33.7 0.43426296 12-120 109 1
TF314412 1.8E-7 1 28.7 0.42231077 15-120 106 1
TF352129 8.4E-24 1 84.0 0.45816734 135-249 115 1
TF338379 4.5E-10 1 37.6 0.44621515 135-246 112 1
TF313779 1.1E-8 1 34.3 0.45816734 135-249 115 1
TF300201 1.5E-8 1 32.5 0.45816734 135-249 115 1
TF101216 2.4E-6 1 25.8 0.41035858 135-237 103 1
TF354228 1.8E-5 1 23.2 0.43426296 135-243 109 1
TF354229 2.2E-5 1 21.9 0.42231077 138-243 106 1
TF323925 5.6E-5 1 21.0 0.43426296 138-246 109 1
TF314529 2.8E-4 1 18.5 0.42231077 144-249 106 1
TF353890 4.6E-40 4 136.6 0.9760956 2-248 247 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)