Contig : dd_Smed_v6_3485_0_1 S. mediterranea

Id  dd_Smed_v6_3485_0_1 Length  1325    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_075615.2 Mus musculus RAB8A, member RAS oncogene family 7.0E-93 124-744 621 1
NP_005361.2 Homo sapiens RAB8A, member RAS oncogene family 5.0E-92 124-744 621 1
NP_001116975.1 Strongylocentrotus purpuratus GTPase homolog 7.0E-93 124-744 621 1

17 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51419 PROFILE small GTPase Rab1 family profile. 36.856 133-732 600 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 1.75E-42 271-336 66 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 1.75E-42 217-264 48 1
SM00176 SMART IPR002041 Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases 4.6E-5 163-741 579 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 1.75E-42 457-495 39 1
PTHR24073 PANTHER FAMILY NOT NAMED 3.1E-117 124-735 612 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 1.9E-13 154-636 483 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 8.0E-73 124-663 540 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 1.75E-42 562-627 66 1
SM00175 SMART IPR003579 Rab subfamily of small GTPases 4.4E-106 148-636 489 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 8.2E-33 139-636 498 1
PTHR24073:SF456 PANTHER IP08727P-RELATED 3.1E-117 124-735 612 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.68E-62 133-654 522 1
PF00071 PFAM IPR001806 Ras family 1.6E-65 151-630 480 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 8.2E-32 148-609 462 1
PR00449 PRINTS IPR001806 Transforming protein P21 ras signature 1.75E-42 148-210 63 1
SM00177 SMART IPR024156 ARF-like small GTPases; ARF, ADP-ribosylation factor 1.2E-4 112-639 528 1

4 ORFs

Contig Location Length Strand Sequence
124-744 621 1
199-450 252 -1
138-278 141 -1
975-1094 120 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313106 5.2E-60 1 202.9 0.4173585 138-690 553 1
TF324491 1.4E-46 1 158.3 0.41962263 141-696 556 1
TF317494 3.2E-39 1 134.8 0.4173585 141-693 553 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)