Contig : dd_Smed_v6_346_0_1 S. mediterranea

Id  dd_Smed_v6_346_0_1 Length  1085    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_726581.1 Drosophila melanogaster Purine-rich binding protein-alpha 4.0E-85 196-831 636 1
NP_005850.1 Homo sapiens purine-rich element binding protein A 4.0E-68 187-831 645 1
NP_033015.1 Mus musculus purine rich element binding protein A 5.0E-68 187-831 645 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12611 PANTHER IPR006628 PUR-TRANSCRIPTIONAL ACTIVATOR 9.6E-122 181-828 648 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 1.5E-21 649-831 183 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 3.4E-26 202-387 186 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 3.1E-24 433-615 183 1
PF04845 PFAM IPR006628 PurA ssDNA and RNA-binding protein 4.9E-94 196-828 633 1

2 ORFs

Contig Location Length Strand Sequence
151-894 744 1
730-951 222 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313701 3.0E-138 1 461.5 0.58986175 198-837 640 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)