Transcript : dd_Smed_v6_346_0_1 S. mediterranea

Length  1085     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068174.1, clone H.10.7h unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_726581.1 Drosophila melanogaster Purine-rich binding protein-alpha 4.0E-85 196-831 636 1
NP_005850.1 Homo sapiens purine-rich element binding protein A 4.0E-68 187-831 645 1
NP_033015.1 Mus musculus purine rich element binding protein A 5.0E-68 187-831 645 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR12611 PANTHER IPR006628 PUR-TRANSCRIPTIONAL ACTIVATOR 9.6E-122 181-828 648 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 1.5E-21 649-831 183 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 3.4E-26 202-387 186 1
SM00712 SMART IPR006628 DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria. 3.1E-24 433-615 183 1
PF04845 PFAM IPR006628 PurA ssDNA and RNA-binding protein 4.9E-94 196-828 633 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
151-894 744 1
730-951 222 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313701 3.0E-138 1 461.5 0.58986175 198-837 640 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)