Transcript : dd_Smed_v6_344_0_1 S. mediterranea

Length  2120     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066619.1, clone H.122.6c unknown mRNA sequence
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Organism Field Displayer

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Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592437.1 Schmidtea mediterranea cytochrome b 5.0E-178 210-1304 1095 1
YP_004021836.1 Opilio parietinus cytochrome b 1.0E-77 225-1211 987 1
YP_007317465.1 Callitettix versicolor cytochrome b 4.0E-75 225-1217 993 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13631 PFAM IPR005797 Cytochrome b(N-terminal)/b6/petB 9.1E-12 432-569 138 1
SSF81342 SSF IPR016174 Transmembrane di-heme cytochromes 1.44E-31 291-569 279 1
PTHR19271 PANTHER CYTOCHROME B 5.3E-26 291-569 279 1
PS51002 PROFILE IPR005797 Cytochrome b/b6 N-terminal region profile. 18.754 291-569 279 1
G3DSA:1.20.810.10 GENE3D IPR027387 Cytochrome Bc1 Complex; Chain C 3.3E-31 291-569 279 1
G3DSA:1.20.810.10 GENE3D IPR027387 Cytochrome Bc1 Complex; Chain C 1.6E-55 666-1265 600 1
PS51002 PROFILE IPR005797 Cytochrome b/b6 N-terminal region profile. 8.975 666-794 129 1
PTHR19271 PANTHER CYTOCHROME B 1.4E-34 666-1268 603 1
PF00032 PFAM IPR005798 Cytochrome b(C-terminal)/b6/petD 6.8E-28 942-1241 300 1
SSF81648 SSF IPR005798 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 1.06E-42 747-1208 462 1
PS51003 PROFILE IPR005798 Cytochrome b/b6 C-terminal region profile. 29.31 798-1301 504 1
PF13631 PFAM IPR005797 Cytochrome b(N-terminal)/b6/petB 1.3E-14 666-917 252 1

Genomics

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7 ORFs

Contig Location Length Strand Sequence
825-1304 480 1
1518-1901 384 1
1786-1944 159 1
850-993 144 1
1995-2120 126 1
1274-1396 123 1
651-758 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353088 1.2E-124 3 416.1 0.49292454 231-1275 1045 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)