Contig : dd_Smed_v6_344_0_1 S. mediterranea

Id  dd_Smed_v6_344_0_1 Length  2120    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592437.1 Schmidtea mediterranea cytochrome b 5.0E-178 210-1304 1095 1
YP_004021836.1 Opilio parietinus cytochrome b 1.0E-77 225-1211 987 1
YP_007317465.1 Callitettix versicolor cytochrome b 4.0E-75 225-1217 993 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF13631 PFAM IPR005797 Cytochrome b(N-terminal)/b6/petB 9.1E-12 432-569 138 1
SSF81342 SSF IPR016174 Transmembrane di-heme cytochromes 1.44E-31 291-569 279 1
PTHR19271 PANTHER CYTOCHROME B 5.3E-26 291-569 279 1
PS51002 PROFILE IPR005797 Cytochrome b/b6 N-terminal region profile. 18.754 291-569 279 1
G3DSA:1.20.810.10 GENE3D IPR027387 Cytochrome Bc1 Complex; Chain C 3.3E-31 291-569 279 1
G3DSA:1.20.810.10 GENE3D IPR027387 Cytochrome Bc1 Complex; Chain C 1.6E-55 666-1265 600 1
PS51002 PROFILE IPR005797 Cytochrome b/b6 N-terminal region profile. 8.975 666-794 129 1
PTHR19271 PANTHER CYTOCHROME B 1.4E-34 666-1268 603 1
PF00032 PFAM IPR005798 Cytochrome b(C-terminal)/b6/petD 6.8E-28 942-1241 300 1
SSF81648 SSF IPR005798 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 1.06E-42 747-1208 462 1
PS51003 PROFILE IPR005798 Cytochrome b/b6 C-terminal region profile. 29.31 798-1301 504 1
PF13631 PFAM IPR005797 Cytochrome b(N-terminal)/b6/petB 1.3E-14 666-917 252 1

7 ORFs

Contig Location Length Strand Sequence
825-1304 480 1
1518-1901 384 1
1786-1944 159 1
850-993 144 1
1995-2120 126 1
1274-1396 123 1
651-758 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353088 1.2E-124 3 416.1 0.49292454 231-1275 1045 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)