Contig : dd_Smed_v6_3406_0_1 S. mediterranea

Id  dd_Smed_v6_3406_0_1 Length  1331    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_995907.1 Drosophila melanogaster bancal 8.0E-32 188-721 534 1
XP_003369271.1 Trichinella spiralis putative KH domain protein 2.0E-41 185-1117 933 1
XP_004022751.1 Ovis aries heterogeneous nuclear ribonucleoprotein K-like 2.0E-39 137-1126 990 1

17 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00322 SMART IPR004087 K homology RNA-binding domain 5.8E-15 908-1117 210 1
SM00322 SMART IPR004087 K homology RNA-binding domain 9.4E-10 176-379 204 1
SM00322 SMART IPR004087 K homology RNA-binding domain 1.5 434-649 216 1
G3DSA:3.30.1370.10 GENE3D IPR004088   1.2E-18 899-1114 216 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.48E-17 893-1117 225 1
PF00013 PFAM IPR004088 KH domain 1.7E-11 188-340 153 1
PF00013 PFAM IPR004088 KH domain 1.2E-15 920-1102 183 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 11.531 437-637 201 1
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8.3E-76 182-1114 933 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 12.244 179-388 210 1
PTHR10288:SF102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 8.3E-76 182-1114 933 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.78E-12 425-682 258 1
PF13014 PFAM IPR004088 KH domain 3.7E-7 473-598 126 1
G3DSA:3.30.1370.10 GENE3D IPR004088   9.8E-17 431-661 231 1
G3DSA:3.30.1370.10 GENE3D IPR004088   2.4E-18 182-379 198 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.07E-11 161-361 201 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 16.793 911-1102 192 1

5 ORFs

Contig Location Length Strand Sequence
122-1132 1011 1
88-390 303 -1
575-721 147 -1
878-1012 135 -1
825-956 132 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316335 2.0E-69 2 234.5 0.45379415 183-786 604 1
TF318292 5.1E-41 2 140.5 0.6949662 186-1110 925 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)