Transcript : dd_Smed_v6_3406_0_1 S. mediterranea

Length  1331     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_995907.1 Drosophila melanogaster bancal 8.0E-32 188-721 534 1
XP_003369271.1 Trichinella spiralis putative KH domain protein 2.0E-41 185-1117 933 1
XP_004022751.1 Ovis aries heterogeneous nuclear ribonucleoprotein K-like 2.0E-39 137-1126 990 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00322 SMART IPR004087 K homology RNA-binding domain 5.8E-15 908-1117 210 1
SM00322 SMART IPR004087 K homology RNA-binding domain 9.4E-10 176-379 204 1
SM00322 SMART IPR004087 K homology RNA-binding domain 1.5 434-649 216 1
G3DSA:3.30.1370.10 GENE3D IPR004088   1.2E-18 899-1114 216 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.48E-17 893-1117 225 1
PF00013 PFAM IPR004088 KH domain 1.7E-11 188-340 153 1
PF00013 PFAM IPR004088 KH domain 1.2E-15 920-1102 183 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 11.531 437-637 201 1
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8.3E-76 182-1114 933 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 12.244 179-388 210 1
PTHR10288:SF102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 8.3E-76 182-1114 933 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.78E-12 425-682 258 1
PF13014 PFAM IPR004088 KH domain 3.7E-7 473-598 126 1
G3DSA:3.30.1370.10 GENE3D IPR004088   9.8E-17 431-661 231 1
G3DSA:3.30.1370.10 GENE3D IPR004088   2.4E-18 182-379 198 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 2.07E-11 161-361 201 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 16.793 911-1102 192 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
122-1132 1011 1
88-390 303 -1
575-721 147 -1
878-1012 135 -1
825-956 132 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316335 2.0E-69 2 234.5 0.45379415 183-786 604 1
TF318292 5.1E-41 2 140.5 0.6949662 186-1110 925 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)