Contig : dd_Smed_v6_33384_0_1 S. mediterranea

Id  dd_Smed_v6_33384_0_1 Length  1995    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001034485.1 Homo sapiens macrophage expressed 1 3.0E-111 151-1797 1647 1
NP_034951.1 Mus musculus macrophage expressed gene 1 5.0E-107 187-1797 1611 1
XP_004016549.1 Ovis aries macrophage expressed 1 2.0E-116 193-1803 1611 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR31463:SF1 PANTHER NOVEL PROTEIN SIMILAR TO H.SAPIENS MPEG1, MACROPHA 9.3E-175 28-1797 1770 1
PF01823 PFAM IPR020864 MAC/Perforin domain 4.8E-21 445-1056 612 1
PTHR31463 PANTHER FAMILY NOT NAMED 9.3E-175 28-1797 1770 1
SM00457 SMART IPR020864 membrane-attack complex / perforin 3.1E-8 499-1098 600 1
PS51412 PROFILE IPR020864 Membrane attack complex/perforin (MACPF) domain profile. 16.691 118-1104 987 1

6 ORFs

Contig Location Length Strand Sequence
1-1995 1995 1
1355-1618 264 1
1785-1994 210 -1
1589-1708 120 -1
1887-1994 108 1
692-793 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF331165 4.2E-187 1 623.0 0.80802006 189-1800 1612 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)