Transcript : dd_Smed_v6_330_0_1 S. mediterranea

Length  3014     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY068968.1, clone H.32.2c unknown mRNA sequence
AY068968.1, clone H.32.2c unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006316.1 Homo sapiens RAN, member RAS oncogene family 3.0E-111 84-647 564 1
NP_651969.1 Drosophila melanogaster CG1404 gene product from transcript CG1404-RC 1.0E-110 84-653 570 1
NP_001074564.1 Mus musculus RIKEN cDNA 1700009N14 gene 1.0E-107 84-647 564 1

33 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 5.6E-26 1399-1653 255 1
PTHR23007:SF11 PANTHER CBL LONG ISOFORM 7.7E-123 892-2217 1326 1
SSF57850 SSF RING/U-box 2.65E-27 1945-2178 234 1
PTHR23007 PANTHER IPR024162 CBL 7.7E-123 892-2217 1326 1
PS00518 PROSITE IPR017907 Zinc finger RING-type signature. 0.0 2062-2088 27 1
PS51506 PROFILE IPR024159 Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile. 55.95 1003-1926 924 1
PF13920 PFAM Zinc finger, C3HC4 type (RING finger) 8.4E-10 2014-2148 135 1
PF02262 PFAM IPR003153 CBL proto-oncogene N-terminal domain 1 4.5E-16 1048-1389 342 1
PF02761 PFAM IPR014741 CBL proto-oncogene N-terminus, EF hand-like domain 5.0E-24 1402-1650 249 1
PS50089 PROFILE IPR001841 Zinc finger RING-type profile. 12.283 2017-2136 120 1
SSF55550 SSF IPR000980 SH2 domain 1.01E-25 1663-1911 249 1
G3DSA:1.20.930.20 GENE3D IPR003153   1.0E-18 1039-1386 348 1
SM00184 SMART IPR001841 Ring finger 3.9E-5 2017-2133 117 1
SSF47473 SSF EF-hand 2.43E-22 1402-1653 252 1
G3DSA:3.30.505.10 GENE3D IPR000980 SHC Adaptor Protein 8.6E-29 1663-1911 249 1
G3DSA:3.30.40.10 GENE3D IPR013083 Zinc/RING finger domain, C3HC4 (zinc finger) 6.2E-12 1996-2160 165 1
PF02762 PFAM IPR014742 CBL proto-oncogene N-terminus, SH2-like domain 8.7E-29 1663-1914 252 1
SSF47668 SSF IPR003153 N-terminal domain of cbl (N-cbl) 5.75E-16 1042-1389 348 1
PS51418 PROFILE IPR002041 small GTPase Ran family profile. 30.425 84-575 492 1
PF00071 PFAM IPR001806 Ras family 6.1E-51 108-575 468 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 144-185 42 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 567-632 66 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 453-506 54 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 2.1E-12 96-584 489 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.8E-50 102-653 552 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 3.8E-9 111-584 474 1
PTHR24071 PANTHER FAMILY NOT NAMED 5.0E-189 87-719 633 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 1.9E-25 102-548 447 1
SM00176 SMART IPR002041 Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases 8.4E-157 120-719 600 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.6E-58 78-647 570 1

Genomics

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12 ORFs

Contig Location Length Strand Sequence
898-2697 1800 1
81-722 642 1
120-389 270 -1
163-348 186 1
1807-1980 174 -1
535-699 165 -1
1176-1328 153 -1
517-654 138 1
1280-1402 123 -1
1355-1468 114 1
2781-2891 111 1
2864-2974 111 1

0 Treefam Sequence Features

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)