Contig : dd_Smed_v6_330_0_1 S. mediterranea

Id  dd_Smed_v6_330_0_1 Length  3014    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006316.1 Homo sapiens RAN, member RAS oncogene family 3.0E-111 84-647 564 1
NP_651969.1 Drosophila melanogaster CG1404 gene product from transcript CG1404-RC 1.0E-110 84-653 570 1
NP_001074564.1 Mus musculus RIKEN cDNA 1700009N14 gene 1.0E-107 84-647 564 1

33 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 5.6E-26 1399-1653 255 1
PTHR23007:SF11 PANTHER CBL LONG ISOFORM 7.7E-123 892-2217 1326 1
SSF57850 SSF RING/U-box 2.65E-27 1945-2178 234 1
PTHR23007 PANTHER IPR024162 CBL 7.7E-123 892-2217 1326 1
PS00518 PROSITE IPR017907 Zinc finger RING-type signature. 0.0 2062-2088 27 1
PS51506 PROFILE IPR024159 Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile. 55.95 1003-1926 924 1
PF13920 PFAM Zinc finger, C3HC4 type (RING finger) 8.4E-10 2014-2148 135 1
PF02262 PFAM IPR003153 CBL proto-oncogene N-terminal domain 1 4.5E-16 1048-1389 342 1
PF02761 PFAM IPR014741 CBL proto-oncogene N-terminus, EF hand-like domain 5.0E-24 1402-1650 249 1
PS50089 PROFILE IPR001841 Zinc finger RING-type profile. 12.283 2017-2136 120 1
SSF55550 SSF IPR000980 SH2 domain 1.01E-25 1663-1911 249 1
G3DSA:1.20.930.20 GENE3D IPR003153   1.0E-18 1039-1386 348 1
SM00184 SMART IPR001841 Ring finger 3.9E-5 2017-2133 117 1
SSF47473 SSF EF-hand 2.43E-22 1402-1653 252 1
G3DSA:3.30.505.10 GENE3D IPR000980 SHC Adaptor Protein 8.6E-29 1663-1911 249 1
G3DSA:3.30.40.10 GENE3D IPR013083 Zinc/RING finger domain, C3HC4 (zinc finger) 6.2E-12 1996-2160 165 1
PF02762 PFAM IPR014742 CBL proto-oncogene N-terminus, SH2-like domain 8.7E-29 1663-1914 252 1
SSF47668 SSF IPR003153 N-terminal domain of cbl (N-cbl) 5.75E-16 1042-1389 348 1
PS51418 PROFILE IPR002041 small GTPase Ran family profile. 30.425 84-575 492 1
PF00071 PFAM IPR001806 Ras family 6.1E-51 108-575 468 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 144-185 42 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 567-632 66 1
PR00627 PRINTS IPR002041 GTP-binding nuclear protein Ran/Tc4 family signature 4.7E-60 453-506 54 1
SM00173 SMART IPR020849 Ras subfamily of RAS small GTPases 2.1E-12 96-584 489 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.8E-50 102-653 552 1
SM00174 SMART IPR003578 Rho (Ras homology) subfamily of Ras-like small GTPases 3.8E-9 111-584 474 1
PTHR24071 PANTHER FAMILY NOT NAMED 5.0E-189 87-719 633 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 1.9E-25 102-548 447 1
SM00176 SMART IPR002041 Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases 8.4E-157 120-719 600 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.6E-58 78-647 570 1

12 ORFs

Contig Location Length Strand Sequence
898-2697 1800 1
81-722 642 1
120-389 270 -1
163-348 186 1
1807-1980 174 -1
535-699 165 -1
1176-1328 153 -1
517-654 138 1
1280-1402 123 -1
1355-1468 114 1
2781-2891 111 1
2864-2974 111 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)