Contig : dd_Smed_v6_320_0_2 S. mediterranea

Id  dd_Smed_v6_320_0_2 Length  2279    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006588.1 Homo sapiens heat shock 70kDa protein 8 0.0 247-2073 1827 1
NP_077327.1 Rattus norvegicus heat shock 70kDa protein 8 0.0 247-2073 1827 1
NP_990334.1 Gallus gallus heat shock 70kDa protein 8 0.0 247-2073 1827 1

31 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00329 PROSITE IPR018181 Heat shock hsp70 proteins family signature 2. 0.0 826-864 39 1
G3DSA:2.60.34.10 GENE3D IPR029047 Substrate Binding Domain Of DNAk; Chain A, domain 1 8.8E-69 1411-1788 378 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 2.8E-39 928-1167 240 1
PTHR19375 PANTHER HEAT SHOCK PROTEIN 70KDA 0.0 247-2169 1923 1
G3DSA:3.30.30.30 GENE3D   6.1E-37 400-576 177 1
PS01036 PROSITE IPR018181 Heat shock hsp70 proteins family signature 3. 0.0 1237-1278 42 1
G3DSA:3.30.420.40 GENE3D   7.8E-70 604-837 234 1
PS00297 PROSITE IPR018181 Heat shock hsp70 proteins family signature 1. 0.0 262-282 21 1
SSF100920 SSF IPR029047 Heat shock protein 70kD (HSP70), peptide-binding domain 6.8E-65 1396-1863 468 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 334-369 36 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 661-720 60 1
G3DSA:1.20.1270.10 GENE3D IPR029048   2.0E-43 1792-2100 309 1
PTHR19375:SF142 PANTHER HEAT SHOCK 70 KDA PROTEIN COGNATE 1-RELATED 0.0 247-2169 1923 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 250-288 39 1
SSF100934 SSF IPR029048 Heat shock protein 70kD (HSP70), C-terminal subdomain 2.49E-29 1849-2091 243 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 400-423 24 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 1324-1383 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 1405-1461 57 1
G3DSA:3.30.420.40 GENE3D   9.2E-39 841-924 84 1
G3DSA:3.30.420.40 GENE3D   9.2E-39 1183-1311 129 1
PF00012 PFAM IPR013126 Hsp70 protein 3.6E-275 253-2070 1818 1
G3DSA:3.30.420.40 GENE3D   7.8E-70 253-396 144 1
SSF53067 SSF Actin-like ATPase domain 4.66E-69 811-1380 570 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 1648-1695 48 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 844-873 30 1
SSF53067 SSF Actin-like ATPase domain 6.09E-71 247-795 549 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.6E-89 1228-1275 48 1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 2.2E-10 1563-1703 141 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 3.1E-11 876-1088 213 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 8.7E-9 618-746 129 -1

5 ORFs

Contig Location Length Strand Sequence
151-2172 2022 1
1566-1790 225 -1
1526-1669 144 -1
868-984 117 -1
1328-1432 105 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105044 0.0 1 1223.0 0.8258008 246-2127 1882 1
TF105046 1.3E-270 1 899.5 0.8021062 249-2076 1828 1
TF354208 0.0 1 1422.4 0.84291357 252-2172 1921 1
TF105045 1.8E-197 1 657.7 0.65598947 252-1746 1495 1
TF105047 5.3E-142 1 473.7 0.4953927 255-1383 1129 1
TF105043 4.3E-113 1 377.9 0.49407634 255-1380 1126 1
TF105048 1.0E-77 1 260.8 0.46643263 318-1380 1063 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)