Contig : dd_Smed_v6_320_0_1 S. mediterranea

Id  dd_Smed_v6_320_0_1 Length  2515    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006588.1 Homo sapiens heat shock 70kDa protein 8 0.0 247-2073 1827 1
NP_077327.1 Rattus norvegicus heat shock 70kDa protein 8 0.0 247-2073 1827 1
NP_990334.1 Gallus gallus heat shock 70kDa protein 8 0.0 247-2073 1827 1

31 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00329 PROSITE IPR018181 Heat shock hsp70 proteins family signature 2. 0.0 826-864 39 1
G3DSA:1.20.1270.10 GENE3D IPR029048   5.1E-43 1792-2094 303 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 2.9E-39 928-1167 240 1
PTHR19375:SF142 PANTHER HEAT SHOCK 70 KDA PROTEIN COGNATE 1-RELATED 0.0 247-2187 1941 1
SSF100920 SSF IPR029047 Heat shock protein 70kD (HSP70), peptide-binding domain 5.49E-64 1396-1863 468 1
PF00012 PFAM IPR013126 Hsp70 protein 4.6E-275 253-2070 1818 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 661-720 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 844-873 30 1
PTHR19375 PANTHER HEAT SHOCK PROTEIN 70KDA 0.0 247-2187 1941 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 1405-1461 57 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 250-288 39 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 334-369 36 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 400-423 24 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 1324-1383 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 1228-1275 48 1
PS00297 PROSITE IPR018181 Heat shock hsp70 proteins family signature 1. 0.0 262-282 21 1
G3DSA:2.60.34.10 GENE3D IPR029047 Substrate Binding Domain Of DNAk; Chain A, domain 1 8.9E-69 1411-1788 378 1
SSF53067 SSF Actin-like ATPase domain 4.71E-69 811-1380 570 1
G3DSA:3.30.30.30 GENE3D   6.1E-37 400-576 177 1
PS01036 PROSITE IPR018181 Heat shock hsp70 proteins family signature 3. 0.0 1237-1278 42 1
G3DSA:3.30.420.40 GENE3D   7.9E-70 604-837 234 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 4.8E-89 1648-1695 48 1
G3DSA:3.30.420.40 GENE3D   9.3E-39 841-924 84 1
G3DSA:3.30.420.40 GENE3D   9.3E-39 1183-1311 129 1
SSF53067 SSF Actin-like ATPase domain 6.22E-71 247-795 549 1
G3DSA:3.30.420.40 GENE3D   7.9E-70 253-396 144 1
SSF100934 SSF IPR029048 Heat shock protein 70kD (HSP70), C-terminal subdomain 9.81E-30 1852-2088 237 1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 4.2E-8 1562-1693 132 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 3.1E-11 875-1087 213 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 8.7E-9 617-745 129 -1

5 ORFs

Contig Location Length Strand Sequence
151-2190 2040 1
1697-1843 147 1
868-984 117 -1
1912-2022 111 -1
1328-1432 105 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105044 0.0 1 1220.0 0.7518887 246-2136 1891 1
TF105046 5.1E-269 1 894.3 0.73518884 249-2097 1849 1
TF354208 0.0 1 1423.8 0.77097416 252-2190 1939 1
TF105045 2.4E-197 1 657.3 0.5944334 252-1746 1495 1
TF105047 6.8E-142 1 473.3 0.44890657 255-1383 1129 1
TF105043 5.5E-113 1 377.6 0.4477137 255-1380 1126 1
TF105048 1.1E-77 1 260.7 0.42266402 318-1380 1063 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)