Contig : dd_Smed_v6_318_0_1 S. mediterranea

Id  dd_Smed_v6_318_0_1 Length  513    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_649539.1 Drosophila melanogaster Ribosomal protein L35A 9.0E-43 99-464 366 1
NP_000987.2 Homo sapiens ribosomal protein L35a 2.0E-40 138-464 327 1
XP_001473149.1 Mus musculus predicted gene 10029 2.0E-38 138-464 327 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10902 PANTHER IPR001780 60S RIBOSOMAL PROTEIN L35A 9.2E-68 138-461 324 1
SSF50447 SSF IPR009000 Translation proteins 4.86E-34 144-443 300 1
PTHR10902:SF0 PANTHER 60S RIBOSOMAL PROTEIN L35A 9.2E-68 138-461 324 1
PF01247 PFAM IPR001780 Ribosomal protein L35Ae 6.7E-42 144-443 300 1

3 ORFs

Contig Location Length Strand Sequence
96-464 369 1
186-368 183 -1
319-489 171 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300104 2.7E-57 3 192.3 0.6042885 153-462 310 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)