Transcript : dd_Smed_v6_310_0_1 S. mediterranea

Length  445     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-54 142-405 264 1
NP_525075.1 Drosophila melanogaster cut up 4.0E-53 142-405 264 1
XP_006138678.1 Pelodiscus sinensis dynein, light chain, LC8-type 2 8.0E-57 106-405 300 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 1.9E-68 67-402 336 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.5E-47 145-402 258 1
SSF54648 SSF DLC 3.14E-42 142-402 261 1
PF01221 PFAM IPR001372 Dynein light chain type 1 2.8E-45 145-402 258 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.9E-68 67-402 336 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 301-342 42 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
130-444 315 -1
133-405 273 1
167-418 252 1
60-176 117 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 8.5E-74 1 246.9 0.6022472 135-402 268 1
TF354234 6.7E-47 1 160.0 0.5820225 147-405 259 1
TF324136 3.1E-20 1 71.8 0.53483146 162-399 238 1
TF340529 3.1E-27 4 94.7 0.58426964 142-403 262 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)