Contig : dd_Smed_v6_310_0_1 S. mediterranea

Id  dd_Smed_v6_310_0_1 Length  445    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_080832.1 Mus musculus dynein light chain LC8-type 2 2.0E-54 142-405 264 1
NP_525075.1 Drosophila melanogaster cut up 4.0E-53 142-405 264 1
XP_006138678.1 Pelodiscus sinensis dynein, light chain, LC8-type 2 8.0E-57 106-405 300 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886:SF33 PANTHER DYNEIN LIGHT CHAIN 1, CYTOPLASMIC 1.9E-68 67-402 336 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.5E-47 145-402 258 1
SSF54648 SSF DLC 3.14E-42 142-402 261 1
PF01221 PFAM IPR001372 Dynein light chain type 1 2.8E-45 145-402 258 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.9E-68 67-402 336 1
PS01239 PROSITE IPR019763 Dynein light chain type 1 signature. 0.0 301-342 42 1

4 ORFs

Contig Location Length Strand Sequence
130-444 315 -1
133-405 273 1
167-418 252 1
60-176 117 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300264 8.5E-74 1 246.9 0.6022472 135-402 268 1
TF354234 6.7E-47 1 160.0 0.5820225 147-405 259 1
TF324136 3.1E-20 1 71.8 0.53483146 162-399 238 1
TF340529 3.1E-27 4 94.7 0.58426964 142-403 262 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)