Contig : dd_Smed_v6_30_0_2 S. mediterranea

Id  dd_Smed_v6_30_0_2 Length  1717    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001393.1 Homo sapiens eukaryotic translation elongation factor 1 alpha 1 0.0 100-1428 1329 1
NP_031932.1 Mus musculus eukaryotic translation elongation factor 1 alpha 2 0.0 100-1428 1329 1
NP_787032.1 Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 0.0 100-1428 1329 1

18 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.3E-88 112-822 711 1
PTHR23115:SF109 PANTHER SUBFAMILY NOT NAMED 0.0 100-1479 1380 1
SSF50447 SSF IPR009000 Translation proteins 8.84E-29 826-1110 285 1
TIGR00483 TIGRFAMs IPR004539 EF-1_alpha: translation elongation factor EF-1, subunit alpha 2.6E-218 100-1443 1344 1
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 280-324 45 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.1E-77 109-894 786 1
SSF50465 SSF IPR009001 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1.08E-43 1126-1434 309 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.6E-52 1165-1434 270 1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 100-1479 1380 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 541-567 27 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 409-441 33 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 301-324 24 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 361-390 30 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 124-162 39 1
PF03143 PFAM IPR004160 Elongation factor Tu C-terminal domain 6.7E-34 1114-1434 321 1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 1.3E-16 892-1089 198 1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 3.1E-56 112-813 702 1
G3DSA:2.40.30.10 GENE3D Translation factors 8.3E-49 835-1161 327 1

5 ORFs

Contig Location Length Strand Sequence
100-1488 1389 1
181-507 327 -1
1012-1215 204 -1
2-127 126 1
1034-1144 111 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300566 4.7E-122 1 408.0 0.7711124 114-1437 1324 1
TF300432 3.7E-55 1 186.6 0.4740827 282-1095 814 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)