Transcript : dd_Smed_v6_30_0_2 S. mediterranea
Length  1717     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001393.1 Homo sapiens eukaryotic translation elongation factor 1 alpha 1 0.0 100-1428 1329 1
NP_031932.1 Mus musculus eukaryotic translation elongation factor 1 alpha 2 0.0 100-1428 1329 1
NP_787032.1 Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 0.0 100-1428 1329 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.3E-88 112-822 711 1
PTHR23115:SF109 PANTHER SUBFAMILY NOT NAMED 0.0 100-1479 1380 1
SSF50447 SSF IPR009000 Translation proteins 8.84E-29 826-1110 285 1
TIGR00483 TIGRFAMs IPR004539 EF-1_alpha: translation elongation factor EF-1, subunit alpha 2.6E-218 100-1443 1344 1
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 280-324 45 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.1E-77 109-894 786 1
SSF50465 SSF IPR009001 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1.08E-43 1126-1434 309 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.6E-52 1165-1434 270 1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 100-1479 1380 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 541-567 27 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 409-441 33 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 301-324 24 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 361-390 30 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 9.823977E-25 124-162 39 1
PF03143 PFAM IPR004160 Elongation factor Tu C-terminal domain 6.7E-34 1114-1434 321 1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 1.3E-16 892-1089 198 1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 3.1E-56 112-813 702 1
G3DSA:2.40.30.10 GENE3D Translation factors 8.3E-49 835-1161 327 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
100-1488 1389 1
181-507 327 -1
1012-1215 204 -1
2-127 126 1
1034-1144 111 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300566 4.7E-122 1 408.0 0.7711124 114-1437 1324 1
TF300432 3.7E-55 1 186.6 0.4740827 282-1095 814 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)