Contig : dd_Smed_v6_30_0_1 S. mediterranea

Id  dd_Smed_v6_30_0_1 Length  1733    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001393.1 Homo sapiens eukaryotic translation elongation factor 1 alpha 1 0.0 116-1444 1329 1
NP_031932.1 Mus musculus eukaryotic translation elongation factor 1 alpha 2 0.0 116-1444 1329 1
NP_787032.1 Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 0.0 116-1444 1329 1

18 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23115:SF109 PANTHER SUBFAMILY NOT NAMED 0.0 116-1495 1380 1
G3DSA:2.40.30.10 GENE3D Translation factors 7.9E-49 851-1177 327 1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 116-1495 1380 1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 1.3E-16 908-1105 198 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.5E-52 1181-1450 270 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 425-457 33 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 140-178 39 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 557-583 27 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 317-340 24 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 377-406 30 1
PF03143 PFAM IPR004160 Elongation factor Tu C-terminal domain 6.4E-34 1130-1450 321 1
TIGR00483 TIGRFAMs IPR004539 EF-1_alpha: translation elongation factor EF-1, subunit alpha 2.3E-218 116-1459 1344 1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 2.9E-56 128-829 702 1
SSF50447 SSF IPR009000 Translation proteins 8.39E-29 842-1126 285 1
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 296-340 45 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.85E-77 125-910 786 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.2E-88 128-838 711 1
SSF50465 SSF IPR009001 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1.01E-43 1142-1450 309 1

4 ORFs

Contig Location Length Strand Sequence
116-1504 1389 1
92-523 432 -1
1028-1231 204 -1
1050-1160 111 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300566 4.9E-122 2 408.0 0.7639931 129-1452 1324 1
TF300432 3.8E-55 2 186.6 0.4697057 297-1110 814 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)