Transcript : dd_Smed_v6_30_0_1 S. mediterranea

Length  1733     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KY348652.1, hypothetical protein Smed-ef1a-2 mRNA - complete cds
EST: AY067689.1, clone HB.9.12c unknown mRNA sequence
AY067688.1, clone HB.8.6b unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001393.1 Homo sapiens eukaryotic translation elongation factor 1 alpha 1 0.0 116-1444 1329 1
NP_031932.1 Mus musculus eukaryotic translation elongation factor 1 alpha 2 0.0 116-1444 1329 1
NP_787032.1 Rattus norvegicus eukaryotic translation elongation factor 1 alpha 1 0.0 116-1444 1329 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23115:SF109 PANTHER SUBFAMILY NOT NAMED 0.0 116-1495 1380 1
G3DSA:2.40.30.10 GENE3D Translation factors 7.9E-49 851-1177 327 1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 116-1495 1380 1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 1.3E-16 908-1105 198 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.5E-52 1181-1450 270 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 425-457 33 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 140-178 39 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 557-583 27 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 317-340 24 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 8.56E-25 377-406 30 1
PF03143 PFAM IPR004160 Elongation factor Tu C-terminal domain 6.4E-34 1130-1450 321 1
TIGR00483 TIGRFAMs IPR004539 EF-1_alpha: translation elongation factor EF-1, subunit alpha 2.3E-218 116-1459 1344 1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 2.9E-56 128-829 702 1
SSF50447 SSF IPR009000 Translation proteins 8.39E-29 842-1126 285 1
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 296-340 45 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.85E-77 125-910 786 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.2E-88 128-838 711 1
SSF50465 SSF IPR009001 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1.01E-43 1142-1450 309 1

Genomics

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4 ORFs

Contig Location Length Strand Sequence
116-1504 1389 1
92-523 432 -1
1028-1231 204 -1
1050-1160 111 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300566 4.9E-122 2 408.0 0.7639931 129-1452 1324 1
TF300432 3.8E-55 2 186.6 0.4697057 297-1110 814 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)