Transcript : dd_Smed_v6_3093_0_1 S. mediterranea

Length  1539     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067923.1, clone H.32.9h unknown mRNA sequence
AY067620.1, clone H.61.3e unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_525118.2 Drosophila melanogaster Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 2 2.0E-49 235-945 711 1
XP_969342.2 Tribolium castaneum peptidyl-alpha-hydroxyglycine alpha-amidating lyase 2 1.0E-54 238-1140 903 1
XP_006219929.1 Vicugna pacos probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase F21F3.1 2.0E-53 274-1116 843 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10680 PANTHER PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE 3.9E-88 235-1113 879 1
PS51125 PROFILE IPR013017 NHL repeat profile. 4.42 448-498 51 1
PS51125 PROFILE IPR013017 NHL repeat profile. 9.91 607-723 117 1
PF01436 PFAM IPR001258 NHL repeat 4.0E-4 649-714 66 1
G3DSA:2.120.10.30 GENE3D IPR011042 TolB, C-terminal domain 1.3E-25 280-978 699 1
PS51125 PROFILE IPR013017 NHL repeat profile. 6.517 826-864 39 1
SSF63829 SSF Calcium-dependent phosphotriesterase 4.51E-19 241-1134 894 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
73-1257 1185 1
958-1119 162 -1
1333-1470 138 1
1169-1306 138 -1
233-361 129 -1
1342-1449 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320698 1.9E-82 1 277.2 0.48408058 234-978 745 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)