Contig : dd_Smed_v6_3093_0_1 S. mediterranea

Id  dd_Smed_v6_3093_0_1 Length  1539    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_525118.2 Drosophila melanogaster Peptidyl-alpha-hydroxyglycine-alpha-amidating lyase 2 2.0E-49 235-945 711 1
XP_969342.2 Tribolium castaneum peptidyl-alpha-hydroxyglycine alpha-amidating lyase 2 1.0E-54 238-1140 903 1
XP_006219929.1 Vicugna pacos probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase F21F3.1-like 2.0E-53 274-1116 843 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10680 PANTHER PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE 3.9E-88 235-1113 879 1
PS51125 PROFILE IPR013017 NHL repeat profile. 4.42 448-498 51 1
PS51125 PROFILE IPR013017 NHL repeat profile. 9.91 607-723 117 1
PF01436 PFAM IPR001258 NHL repeat 4.0E-4 649-714 66 1
G3DSA:2.120.10.30 GENE3D IPR011042 TolB, C-terminal domain 1.3E-25 280-978 699 1
PS51125 PROFILE IPR013017 NHL repeat profile. 6.517 826-864 39 1
SSF63829 SSF Calcium-dependent phosphotriesterase 4.51E-19 241-1134 894 1

6 ORFs

Contig Location Length Strand Sequence
73-1257 1185 1
958-1119 162 -1
1333-1470 138 1
1169-1306 138 -1
233-361 129 -1
1342-1449 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320698 1.9E-82 1 277.2 0.48408058 234-978 745 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)