Transcript : dd_Smed_v6_308_0_1 S. mediterranea

Length  1403     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067674.1, clone HB.2.7g unknown mRNA sequence
AY067673.1, clone H.85.11a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001395.1 Homo sapiens eukaryotic translation elongation factor 1 gamma 1.0E-105 109-1338 1230 1
NP_080283.3 Mus musculus eukaryotic translation elongation factor 1 gamma 1.0E-103 109-1338 1230 1
NP_652000.1 Drosophila melanogaster CG11901 gene product from transcript CG11901-RC 7.0E-90 109-1338 1230 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF47616 SSF IPR010987 GST C-terminal domain-like 8.35E-25 334-759 426 1
PS50040 PROFILE IPR001662 Elongation factor 1 (EF-1) gamma C-terminal domain profile. 59.176 877-1350 474 1
PS50405 PROFILE IPR010987 Soluble glutathione S-transferase C-terminal domain profile. 20.456 328-705 378 1
SSF89942 SSF IPR001662 eEF1-gamma domain 2.35E-60 883-1350 468 1
G3DSA:3.30.70.1010 GENE3D IPR001662 eEF1-gamma domain 3.6E-65 883-1350 468 1
PTHR11260 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST D 1.3E-148 109-1350 1242 1
PF00647 PFAM IPR001662 Elongation factor 1 gamma, conserved domain 5.9E-43 883-1191 309 1
PF00043 PFAM IPR004046 Glutathione S-transferase, C-terminal domain 1.3E-11 388-654 267 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 9.4E-4 175-345 171 1
G3DSA:1.20.1050.10 GENE3D IPR010987   6.7E-33 349-714 366 1
PTHR11260:SF161 PANTHER ELONGATION FACTOR 1-GAMMA 1.3E-148 109-1350 1242 1

Genomics

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6 ORFs

Contig Location Length Strand Sequence
109-1353 1245 1
716-964 249 1
127-306 180 -1
1008-1130 123 -1
1288-1401 114 -1
2-109 108 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314343 9.2E-195 1 648.6 0.8816821 117-1353 1237 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)