Transcript : dd_Smed_v6_3065_0_1 S. mediterranea

Length  1999     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: HM135949.1, intermediate filament b (ifb) mRNA - partial cds
EST: AY067086.1, clone H.106.2e unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_034852.2 Mus musculus lamin B2 4.0E-29 307-1860 1554 1
NP_116126.3 Homo sapiens lamin B2 5.0E-28 307-1866 1560 1
XP_003377744.1 Trichinella spiralis intermediate filament protein ifa-1 2.0E-100 139-1884 1746 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF64593 SSF Intermediate filament protein, coiled coil region 6.28E-11 313-411 99 1
SSF74853 SSF IPR001322 Lamin A/C globular tail domain 3.92E-36 1456-1878 423 1
SSF64593 SSF Intermediate filament protein, coiled coil region 3.49E-11 1156-1368 213 1
G3DSA:2.60.40.1260 GENE3D IPR001322   7.0E-31 1453-1881 429 1
PTHR23239 PANTHER IPR001664 INTERMEDIATE FILAMENT 1.4E-114 73-1869 1797 1
PF00932 PFAM IPR001322 Lamin Tail Domain 2.4E-10 1525-1866 342 1
G3DSA:1.20.5.170 GENE3D   1.5E-11 1228-1371 144 1
PF00038 PFAM IPR001664 Intermediate filament protein 1.7E-51 313-1368 1056 1
PTHR23239:SF84 PANTHER INTERMEDIATE FILAMENT PROTEIN IFA-1 1.4E-114 73-1869 1797 1
PS00226 PROSITE IPR018039 Intermediate filaments signature. 0.0 1330-1353 24 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
58-1887 1830 1
1107-1277 171 -1
1327-1464 138 -1
1682-1816 135 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101181 1.4E-144 1 483.1 0.7868934 309-1881 1573 1

Expression Information

Planmine Rnai Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)