Transcript : dd_Smed_v6_3059_0_1 S. mediterranea

Length  1889     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001864.1 Homo sapiens carboxypeptidase E 3.0E-115 92-1348 1257 1
NP_038522.2 Mus musculus carboxypeptidase E 6.0E-114 92-1348 1257 1
XP_001807518.1 Tribolium castaneum carboxypeptidase E 8.0E-127 62-1351 1290 1

15 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53187 SSF Zn-dependent exopeptidases 9.74E-60 116-1072 957 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 695-733 39 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 293-334 42 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 521-544 24 1
G3DSA:2.60.40.1120 GENE3D IPR014766   1.6E-18 1076-1387 312 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 215-250 36 1
PF00246 PFAM IPR000834 Zinc carboxypeptidase 1.3E-64 149-1012 864 1
PTHR11532:SF41 PANTHER CARBOXYPEPTIDASE E 2.3E-175 110-1468 1359 1
PTHR11532 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 2.3E-175 110-1468 1359 1
PF13620 PFAM Carboxypeptidase regulatory-like domain 3.7E-8 1079-1342 264 1
G3DSA:3.40.630.10 GENE3D Zn peptidases 1.3E-83 119-1069 951 1
PS00133 PROSITE IPR000834 Zinc carboxypeptidases, zinc-binding region 2 signature. 0.0 704-733 30 1
SSF49464 SSF IPR008969 Carboxypeptidase regulatory domain-like 1.37E-12 1076-1372 297 1
SM00631 SMART IPR000834   3.8E-24 494-1396 903 1
PS00132 PROSITE IPR000834 Zinc carboxypeptidases, zinc-binding region 1 signature. 0.0 293-358 66 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
53-1483 1431 1
68-280 213 -1
449-601 153 -1
1454-1600 147 -1
985-1104 120 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)