Contig : dd_Smed_v6_3059_0_1 S. mediterranea

Id  dd_Smed_v6_3059_0_1 Length  1889    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001864.1 Homo sapiens carboxypeptidase E 3.0E-115 92-1348 1257 1
NP_038522.2 Mus musculus carboxypeptidase E 6.0E-114 92-1348 1257 1
XP_001807518.1 Tribolium castaneum carboxypeptidase E-like 8.0E-127 62-1351 1290 1

15 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53187 SSF Zn-dependent exopeptidases 9.74E-60 116-1072 957 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 695-733 39 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 293-334 42 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 521-544 24 1
G3DSA:2.60.40.1120 GENE3D IPR014766   1.6E-18 1076-1387 312 1
PR00765 PRINTS IPR000834 Carboxypeptidase A metalloprotease (M14) family signature 1.1E-14 215-250 36 1
PF00246 PFAM IPR000834 Zinc carboxypeptidase 1.3E-64 149-1012 864 1
PTHR11532:SF41 PANTHER CARBOXYPEPTIDASE E 2.3E-175 110-1468 1359 1
PTHR11532 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 2.3E-175 110-1468 1359 1
PF13620 PFAM Carboxypeptidase regulatory-like domain 3.7E-8 1079-1342 264 1
G3DSA:3.40.630.10 GENE3D Zn peptidases 1.3E-83 119-1069 951 1
PS00133 PROSITE IPR000834 Zinc carboxypeptidases, zinc-binding region 2 signature. 0.0 704-733 30 1
SSF49464 SSF IPR008969 Carboxypeptidase regulatory domain-like 1.37E-12 1076-1372 297 1
SM00631 SMART IPR000834   3.8E-24 494-1396 903 1
PS00132 PROSITE IPR000834 Zinc carboxypeptidases, zinc-binding region 1 signature. 0.0 293-358 66 1

5 ORFs

Contig Location Length Strand Sequence
53-1483 1431 1
68-280 213 -1
449-601 153 -1
1454-1600 147 -1
985-1104 120 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)