Transcript : dd_Smed_v6_30574_0_1 S. mediterranea

Length  3395     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005493.2 Homo sapiens ATP binding cassette subfamily A member 1 0.0 104-3361 3258 1
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 104-3361 3258 1
NP_835196.1 Rattus norvegicus ATP binding cassette subfamily A member 1 0.0 104-3361 3258 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00005 PFAM IPR003439 ABC transporter 1.5E-28 1856-2284 429 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 8.67E-56 1802-2449 648 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 19.901 1802-2497 696 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 194-3322 3129 1
PF12698 PFAM ABC-2 family transporter protein 6.8E-19 935-1615 681 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 3.4E-67 1775-2509 735 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 7.4E-9 1880-2428 549 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 2201-2242 42 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
2-3394 3393 1
3051-3251 201 -1
2098-2232 135 -1
1269-1394 126 1
81-203 123 1
1442-1564 123 -1
1138-1260 123 -1
997-1107 111 -1
1617-1724 108 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105192 2.6E-133 2 444.4 0.6294551 621-2757 2137 1
TF328040 2.7E-134 2 448.7 0.51104563 1020-2754 1735 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)