Contig : dd_Smed_v6_30574_0_1 S. mediterranea

Id  dd_Smed_v6_30574_0_1 Length  3395    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005493.2 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 1 0.0 104-3361 3258 1
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 104-3361 3258 1
NP_835196.1 Rattus norvegicus ATP-binding cassette, subfamily A (ABC1), member 1 0.0 104-3361 3258 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00005 PFAM IPR003439 ABC transporter 1.5E-28 1856-2284 429 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 8.67E-56 1802-2449 648 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 19.901 1802-2497 696 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 194-3322 3129 1
PF12698 PFAM ABC-2 family transporter protein 6.8E-19 935-1615 681 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 3.4E-67 1775-2509 735 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 7.4E-9 1880-2428 549 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 2201-2242 42 1

9 ORFs

Contig Location Length Strand Sequence
2-3394 3393 1
3051-3251 201 -1
2098-2232 135 -1
1269-1394 126 1
81-203 123 1
1442-1564 123 -1
1138-1260 123 -1
997-1107 111 -1
1617-1724 108 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105192 2.6E-133 2 444.4 0.6294551 621-2757 2137 1
TF328040 2.7E-134 2 448.7 0.51104563 1020-2754 1735 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)