Transcript : dd_Smed_v6_301_0_1 S. mediterranea

Length  788     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_083434.1 Mus musculus zinc finger, CCHC domain containing 13 2.0E-23 130-651 522 1
NP_001120666.1 Homo sapiens CCHC-type zinc finger nucleic acid binding protein 1.0E-22 127-660 534 1
XP_001469754.1 Leishmania infantum JPCM5 putative universal minicircle sequence binding protein (UMSBP) 7.0E-35 118-657 540 1

31 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 6.28E-13 523-654 132 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.872 394-438 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.889 310-348 39 1
PF00098 PFAM IPR001878 Zinc knuckle 5.3E-8 130-174 45 1
PF00098 PFAM IPR001878 Zinc knuckle 4.1E-7 466-507 42 1
PF00098 PFAM IPR001878 Zinc knuckle 3.2E-5 211-255 45 1
PF00098 PFAM IPR001878 Zinc knuckle 1.1E-7 307-348 42 1
PF00098 PFAM IPR001878 Zinc knuckle 1.5E-7 604-651 48 1
PF00098 PFAM IPR001878 Zinc knuckle 2.6E-7 538-588 51 1
PF00098 PFAM IPR001878 Zinc knuckle 1.8E-7 391-438 48 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 3.4E-13 412-513 102 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.3E-15 322-408 87 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 9.77E-6 451-513 63 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.9E-15 538-654 117 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.1E-14 127-234 108 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 5.3E-14 238-318 81 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 5.81E-12 109-264 156 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 11.433 130-174 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.526 607-654 48 1
SM00343 SMART IPR001878 zinc finger 3.1E-4 466-513 48 1
SM00343 SMART IPR001878 zinc finger 1.1E-4 541-588 48 1
SM00343 SMART IPR001878 zinc finger 1.7E-4 307-354 48 1
SM00343 SMART IPR001878 zinc finger 1.1E-5 127-174 48 1
SM00343 SMART IPR001878 zinc finger 1.4E-4 607-654 48 1
SM00343 SMART IPR001878 zinc finger 2.0E-5 391-438 48 1
SM00343 SMART IPR001878 zinc finger 9.8E-4 211-258 48 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 2.97E-13 277-441 165 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.576 541-588 48 1
PTHR23002 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 4.8E-47 103-585 483 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.444 214-258 45 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
103-660 558 1
232-636 405 -1
335-463 129 1
518-637 120 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316974 5.5E-51 1 173.9 0.5647208 210-654 445 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)