Contig : dd_Smed_v6_301_0_1 S. mediterranea

Id  dd_Smed_v6_301_0_1 Length  788    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_083434.1 Mus musculus zinc finger, CCHC domain containing 13 2.0E-23 130-651 522 1
NP_001120666.1 Homo sapiens CCHC-type zinc finger, nucleic acid binding protein 1.0E-22 127-660 534 1
XP_001469754.1 Leishmania infantum JPCM5 putative universal minicircle sequence binding protein (UMSBP) 7.0E-35 118-657 540 1

31 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 6.28E-13 523-654 132 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.872 394-438 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.889 310-348 39 1
PF00098 PFAM IPR001878 Zinc knuckle 5.3E-8 130-174 45 1
PF00098 PFAM IPR001878 Zinc knuckle 4.1E-7 466-507 42 1
PF00098 PFAM IPR001878 Zinc knuckle 3.2E-5 211-255 45 1
PF00098 PFAM IPR001878 Zinc knuckle 1.1E-7 307-348 42 1
PF00098 PFAM IPR001878 Zinc knuckle 1.5E-7 604-651 48 1
PF00098 PFAM IPR001878 Zinc knuckle 2.6E-7 538-588 51 1
PF00098 PFAM IPR001878 Zinc knuckle 1.8E-7 391-438 48 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 3.4E-13 412-513 102 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.3E-15 322-408 87 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 9.77E-6 451-513 63 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.9E-15 538-654 117 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 2.1E-14 127-234 108 1
G3DSA:4.10.60.10 GENE3D IPR001878 HIV-1 Nucleocapsid Protein 5.3E-14 238-318 81 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 5.81E-12 109-264 156 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 11.433 130-174 45 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.526 607-654 48 1
SM00343 SMART IPR001878 zinc finger 3.1E-4 466-513 48 1
SM00343 SMART IPR001878 zinc finger 1.1E-4 541-588 48 1
SM00343 SMART IPR001878 zinc finger 1.7E-4 307-354 48 1
SM00343 SMART IPR001878 zinc finger 1.1E-5 127-174 48 1
SM00343 SMART IPR001878 zinc finger 1.4E-4 607-654 48 1
SM00343 SMART IPR001878 zinc finger 2.0E-5 391-438 48 1
SM00343 SMART IPR001878 zinc finger 9.8E-4 211-258 48 1
SSF57756 SSF IPR001878 Retrovirus zinc finger-like domains 2.97E-13 277-441 165 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.576 541-588 48 1
PTHR23002 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 4.8E-47 103-585 483 1
PS50158 PROFILE IPR001878 Zinc finger CCHC-type profile. 10.444 214-258 45 1

4 ORFs

Contig Location Length Strand Sequence
103-660 558 1
232-636 405 -1
335-463 129 1
518-637 120 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316974 5.5E-51 1 173.9 0.5647208 210-654 445 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)