Contig : dd_Smed_v6_297_0_1 S. mediterranea

Id  dd_Smed_v6_297_0_1 Length  1013    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592434.1 Schmidtea mediterranea cytochrome c oxidase subunit II 0.0 77-934 858 1
YP_006576275.1 Madrepora oculata cytochrome c oxidase subunit II 6.0E-32 203-826 624 1
YP_002265552.1 Cantherhines pardalis cytochrome c oxidase subunit II 7.0E-32 197-868 672 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.60.40.420 GENE3D IPR008972 Cupredoxins - blue copper proteins 5.3E-4 242-358 117 1
PR01166 PRINTS Cytochrome c oxidase subunit II signature 1.1E-24 554-616 63 1
PR01166 PRINTS Cytochrome c oxidase subunit II signature 1.1E-24 686-736 51 1
PR01166 PRINTS Cytochrome c oxidase subunit II signature 1.1E-24 740-790 51 1
PR01166 PRINTS Cytochrome c oxidase subunit II signature 1.1E-24 626-685 60 1
PTHR22888:SF2 PANTHER CYTOCHROME C OXIDASE SUBUNIT 2 5.8E-24 605-820 216 1
PTHR22888 PANTHER CYTOCHROME C OXIDASE, SUBUNIT II 5.8E-24 605-820 216 1
PS50857 PROFILE IPR002429 Cytochrome oxidase subunit II copper A binding domain profile. 27.632 536-826 291 1
PS00078 PROSITE IPR001505 CO II and nitrous oxide reductase dinuclear copper centers signature. 0.0 629-772 144 1
G3DSA:2.60.40.420 GENE3D IPR008972 Cupredoxins - blue copper proteins 4.6E-31 557-826 270 1
PF00116 PFAM IPR002429 Cytochrome C oxidase subunit II, periplasmic domain 4.4E-25 551-793 243 1
SSF49503 SSF IPR008972 Cupredoxins 2.03E-28 554-823 270 1

7 ORFs

Contig Location Length Strand Sequence
746-925 180 -1
773-934 162 1
35-193 159 1
372-506 135 1
672-803 132 1
891-1013 123 1
299-409 111 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)