Transcript : dd_Smed_v6_296_0_1 S. mediterranea

Length  1029     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067190.1, clone H.16.9f unknown mRNA sequence
AY967504.1, clone HE.3.01B mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000963.1 Homo sapiens ribosomal protein L7a 2.0E-102 181-897 717 1
NP_038749.1 Mus musculus ribosomal protein L7A 2.0E-102 181-897 717 1
XP_002735718.1 Saccoglossus kowalevskii 60S ribosomal protein L7a-like 6.0E-105 181-897 717 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 493-552 60 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 316-372 57 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 205-255 51 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 256-306 51 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 772-831 60 1
PR00881 PRINTS IPR018492 Ribosomal protein L7A/RS6 family signature 1.79E-20 610-639 30 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 676-747 72 1
PR00881 PRINTS IPR018492 Ribosomal protein L7A/RS6 family signature 1.79E-20 640-681 42 1
PR00881 PRINTS IPR018492 Ribosomal protein L7A/RS6 family signature 1.79E-20 505-546 42 1
SSF55315 SSF IPR029064 L30e-like 3.61E-30 385-804 420 1
PR00881 PRINTS IPR018492 Ribosomal protein L7A/RS6 family signature 1.79E-20 562-600 39 1
PS01082 PROSITE IPR004037 Ribosomal protein L7Ae signature. 0.0 619-669 51 1
G3DSA:3.30.1330.30 GENE3D IPR029064   1.3E-33 364-801 438 1
PTHR23105:SF1 PANTHER IPR001921 RIBOSOMAL PROTEIN L7A 9.7E-118 118-894 777 1
PF01248 PFAM IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 1.7E-21 499-717 219 1
PTHR23105 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 9.7E-118 118-894 777 1
PR00882 PRINTS IPR001921 Ribosomal protein L7A family signature 9.07E-62 388-426 39 1

Genomics

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3 ORFs

Contig Location Length Strand Sequence
76-897 822 1
575-718 144 1
48-167 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300788 4.4E-142 1 473.7 0.75024295 126-897 772 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)