Transcript : dd_Smed_v6_295_0_1 S. mediterranea

Length  673     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067212.1, clone HB.12.10g unknown mRNA sequence
AY967630.1, clone NBE.5.04H mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001000.2 Homo sapiens ribosomal protein S5 7.0E-99 68-643 576 1
NP_033121.2 Mus musculus ribosomal protein S5 7.0E-99 68-643 576 1
NP_523382.1 Drosophila melanogaster Ribosomal protein S5a 7.0E-95 62-643 582 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.455.10 GENE3D IPR023798 Ribosomal Protein S7; 2.0E-80 83-640 558 1
PTHR11205 PANTHER IPR000235 RIBOSOMAL PROTEIN S7 5.4E-123 77-640 564 1
SSF47973 SSF IPR023798 Ribosomal protein S7 4.84E-62 80-640 561 1
TIGR01028 TIGRFAMs IPR005716 S7_S5_E_A: ribosomal protein S7 1.1E-80 80-640 561 1
PF00177 PFAM IPR023798 Ribosomal protein S7p/S5e 5.5E-38 179-640 462 1

Genomics

Predicted Gene Displayer

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3 ORFs

Contig Location Length Strand Sequence
65-643 579 1
202-357 156 -1
3-134 132 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300872 4.4E-74 2 246.0 0.7459138 141-642 502 1
TF105978 3.6E-6 2 24.8 0.5408618 279-642 364 1

Expression Information

Planmine Rnai Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)