Contig : dd_Smed_v6_292_0_1 S. mediterranea

Id  dd_Smed_v6_292_0_1 Length  822    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592439.1 Schmidtea mediterranea NADH dehydrogenase subunit 4 1.0E-113 1-801 801 1
YP_004936149.1 Dugesia japonica NADH dehydrogenase subunit 4 5.0E-39 10-678 669 1
YP_097033.1 Aneides flavipunctatus NADH dehydrogenase subunit 4 2.0E-22 25-684 660 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22773 PANTHER NADH DEHYDROGENASE 3.0E-19 73-327 255 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 1.1E-17 73-324 252 1
PTHR22773:SF40 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 3.0E-19 73-327 255 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 1.6E-7 349-579 231 1

3 ORFs

Contig Location Length Strand Sequence
430-801 372 1
130-336 207 1
178-312 135 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343520 8.5E-31 1 105.4 0.8004866 15-672 658 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)