Transcript : dd_Smed_v6_292_0_1 S. mediterranea

Length  822     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066613.1, clone H.2.11h unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592439.1 Schmidtea mediterranea NADH dehydrogenase subunit 4 1.0E-113 1-801 801 1
YP_004936149.1 Dugesia japonica NADH dehydrogenase subunit 4 5.0E-39 10-678 669 1
YP_097033.1 Aneides flavipunctatus NADH dehydrogenase subunit 4 2.0E-22 25-684 660 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR22773 PANTHER NADH DEHYDROGENASE 3.0E-19 73-327 255 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 1.1E-17 73-324 252 1
PTHR22773:SF40 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 3.0E-19 73-327 255 1
PF00361 PFAM IPR001750 NADH-Ubiquinone/plastoquinone (complex I), various chains 1.6E-7 349-579 231 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
430-801 372 1
130-336 207 1
178-312 135 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343520 8.5E-31 1 105.4 0.8004866 15-672 658 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)