Transcript : dd_Smed_v6_290_0_1 S. mediterranea

Length  577     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001016.1 Homo sapiens ribosomal protein S23 3.0E-82 106-531 426 1
NP_610939.2 Drosophila melanogaster Ribosomal protein S23 7.0E-81 106-531 426 1
XP_995532.1 Mus musculus predicted gene 8618 1.0E-77 106-531 426 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11652 PANTHER IPR006032 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1.1E-109 88-525 438 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 2.9E-36 157-522 366 1
TIGR00982 TIGRFAMs IPR005680 S23_S12_E_A: ribosomal protein S23 (S12) 9.7E-57 124-525 402 1
PS00055 PROSITE IPR006032 Ribosomal protein S12 signature. 0.0 280-300 21 1
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 2.66E-36 163-522 360 1
PF00164 PFAM IPR006032 Ribosomal protein S12/S23 1.4E-41 127-525 399 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
97-531 435 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300871 7.6E-88 1 292.6 0.6932409 129-528 400 1
TF339350 2.6E-25 4 88.1 0.6221837 115-475 361 -1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)