Contig : dd_Smed_v6_290_0_1 S. mediterranea

Id  dd_Smed_v6_290_0_1 Length  577    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001016.1 Homo sapiens ribosomal protein S23 3.0E-82 106-531 426 1
NP_610939.2 Drosophila melanogaster Ribosomal protein S23 7.0E-81 106-531 426 1
XP_995532.1 Mus musculus predicted gene 8618 1.0E-77 106-531 426 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11652 PANTHER IPR006032 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1.1E-109 88-525 438 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 2.9E-36 157-522 366 1
TIGR00982 TIGRFAMs IPR005680 S23_S12_E_A: ribosomal protein S23 (S12) 9.7E-57 124-525 402 1
PS00055 PROSITE IPR006032 Ribosomal protein S12 signature. 0.0 280-300 21 1
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 2.66E-36 163-522 360 1
PF00164 PFAM IPR006032 Ribosomal protein S12/S23 1.4E-41 127-525 399 1

1 ORFs

Contig Location Length Strand Sequence
97-531 435 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300871 7.6E-88 1 292.6 0.6932409 129-528 400 1
TF339350 2.6E-25 4 88.1 0.6221837 115-475 361 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)