Transcript : dd_Smed_v6_287_0_1 S. mediterranea

Length  716     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: JX010528.1, clone Smed_00846_V2 60S ribosomal protein L13a mRNA - complete cds
AY967598.1, clone NBE.3.08F mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_036555.1 Homo sapiens ribosomal protein L13a 3.0E-83 99-686 588 1
NP_033464.2 Mus musculus ribosomal protein L13A 1.0E-80 99-686 588 1
XP_784515.1 Strongylocentrotus purpuratus 60S ribosomal protein L13a 1.0E-85 84-686 603 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00783 PROSITE IPR023563 Ribosomal protein L13 signature. 0.0 336-404 69 1
TIGR01077 TIGRFAMs IPR005755 L13_A_E: ribosomal protein L13 1.8E-54 108-530 423 1
G3DSA:3.90.1180.10 GENE3D IPR023564   1.2E-54 105-530 426 1
PTHR11545:SF3 PANTHER IPR005755 60S RIBOSOMAL PROTEIN L13A 2.2E-110 84-686 603 1
SSF52161 SSF IPR023564 Ribosomal protein L13 5.89E-47 105-530 426 1
PF00572 PFAM IPR005822 Ribosomal protein L13 2.4E-24 105-434 330 1
PTHR11545 PANTHER IPR005822 RIBOSOMAL PROTEIN L13 2.2E-110 84-686 603 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
84-689 606 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300159 4.5E-104 3 347.1 0.8184357 105-690 586 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)