Contig : dd_Smed_v6_287_0_1 S. mediterranea

Id  dd_Smed_v6_287_0_1 Length  716    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_036555.1 Homo sapiens ribosomal protein L13a 3.0E-83 99-686 588 1
NP_033464.2 Mus musculus ribosomal protein L13A 1.0E-80 99-686 588 1
XP_784515.1 Strongylocentrotus purpuratus 60S ribosomal protein L13a-like 1.0E-85 84-686 603 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00783 PROSITE IPR023563 Ribosomal protein L13 signature. 0.0 336-404 69 1
TIGR01077 TIGRFAMs IPR005755 L13_A_E: ribosomal protein L13 1.8E-54 108-530 423 1
G3DSA:3.90.1180.10 GENE3D IPR023564   1.2E-54 105-530 426 1
PTHR11545:SF3 PANTHER IPR005755 60S RIBOSOMAL PROTEIN L13A 2.2E-110 84-686 603 1
SSF52161 SSF IPR023564 Ribosomal protein L13 5.89E-47 105-530 426 1
PF00572 PFAM IPR005822 Ribosomal protein L13 2.4E-24 105-434 330 1
PTHR11545 PANTHER IPR005822 RIBOSOMAL PROTEIN L13 2.2E-110 84-686 603 1

1 ORFs

Contig Location Length Strand Sequence
84-689 606 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300159 4.5E-104 3 347.1 0.8184357 105-690 586 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)