Contig : dd_Smed_v6_282_0_1 S. mediterranea

Id  dd_Smed_v6_282_0_1 Length  1691    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

0 Blast SequenceFeatures

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF10559 PFAM IPR019561 Plug domain of Sec61p 2.1E-18 195-296 102 1
PS00755 PROSITE IPR002208 Protein secY signature 1. 0.0 300-356 57 1
SSF103491 SSF IPR023201 Preprotein translocase SecY subunit 5.75E-124 96-1460 1365 1
G3DSA:1.10.3370.10 GENE3D IPR023201 Preprotein translocase SecY subunit domain 4.0E-173 96-1469 1374 1
PS00756 PROSITE IPR002208 Protein secY signature 2. 0.0 567-620 54 1
TIGR00967 TIGRFAMs IPR002208 3a0501s007: preprotein translocase, SecY subunit 3.5E-118 162-1463 1302 1
PF00344 PFAM IPR002208 SecY translocase 2.6E-95 300-1445 1146 1
PTHR10906 PANTHER IPR002208 SECY/SEC61-ALPHA FAMILY MEMBER 0.0 78-1478 1401 1

7 ORFs

Contig Location Length Strand Sequence
78-1502 1425 1
1311-1691 381 -1
932-1084 153 -1
1283-1432 150 -1
1198-1338 141 -1
595-732 138 1
176-289 114 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300348 0.0 3 1117.2 0.79716146 153-1500 1348 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)