Transcript : dd_Smed_v6_281_0_1 S. mediterranea

Length  646     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067193.1, clone HB.10.1a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000975.2 Homo sapiens ribosomal protein L23a 1.0E-36 208-573 366 1
XP_006533465.1 Mus musculus ribosomal protein L23A 3.0E-36 208-573 366 1
XP_005351032.1 Microtus ochrogaster 60S ribosomal protein L23a-like 5.0E-38 199-573 375 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00276 PFAM IPR013025 Ribosomal protein L23 4.4E-16 340-573 234 1
G3DSA:3.30.70.330 GENE3D IPR012677   3.7E-29 334-585 252 1
SSF54189 SSF IPR012678 Ribosomal proteins S24e, L23 and L15e 2.34E-22 331-576 246 1
PF03939 PFAM IPR005633 Ribosomal protein L23, N-terminal domain 1.5E-7 163-309 147 1
PS00050 PROSITE IPR001014 Ribosomal protein L23 signature. 0.0 520-564 45 1
PTHR11620 PANTHER 60S RIBOSOMAL PROTEIN L23A 1.2E-69 127-585 459 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
73-588 516 1
541-645 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314116 2.5E-49 1 167.4 0.623839 186-588 403 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)