Contig : dd_Smed_v6_281_0_1 S. mediterranea

Id  dd_Smed_v6_281_0_1 Length  646    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000975.2 Homo sapiens ribosomal protein L23a 1.0E-36 208-573 366 1
XP_006533465.1 Mus musculus ribosomal protein L23A 3.0E-36 208-573 366 1
XP_005351032.1 Microtus ochrogaster 60S ribosomal protein L23a-like 5.0E-38 199-573 375 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00276 PFAM IPR013025 Ribosomal protein L23 4.4E-16 340-573 234 1
G3DSA:3.30.70.330 GENE3D IPR012677   3.7E-29 334-585 252 1
SSF54189 SSF IPR012678 Ribosomal proteins S24e, L23 and L15e 2.34E-22 331-576 246 1
PF03939 PFAM IPR005633 Ribosomal protein L23, N-terminal domain 1.5E-7 163-309 147 1
PS00050 PROSITE IPR001014 Ribosomal protein L23 signature. 0.0 520-564 45 1
PTHR11620 PANTHER 60S RIBOSOMAL PROTEIN L23A 1.2E-69 127-585 459 1

2 ORFs

Contig Location Length Strand Sequence
73-588 516 1
541-645 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314116 2.5E-49 1 167.4 0.623839 186-588 403 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)