Transcript : dd_Smed_v6_2811_0_1 S. mediterranea

Length  1027     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523817.1 Drosophila melanogaster Fibrillarin 5.0E-106 274-957 684 1
NP_001427.2 Homo sapiens fibrillarin 3.0E-104 283-957 675 1
NP_032017.2 Mus musculus fibrillarin 3.0E-104 283-957 675 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 640-726 87 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 328-384 57 1
SSF53335 SSF IPR029063 S-adenosyl-L-methionine-dependent methyltransferases 1.29E-41 280-939 660 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 565-615 51 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 409-465 57 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 886-948 63 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 730-816 87 1
G3DSA:3.30.200.20 GENE3D Phosphorylase Kinase; domain 1 4.0E-22 274-420 147 1
PR00052 PRINTS IPR000692 Fibrillarin signature 8.76E-83 490-552 63 1
G3DSA:3.40.50.150 GENE3D IPR029063 Vaccinia Virus protein VP39 7.6E-48 424-945 522 1
PF01269 PFAM IPR000692 Fibrillarin 3.9E-101 280-948 669 1
PS00566 PROSITE IPR020813 Fibrillarin signature. 0.0 565-606 42 1
PTHR10335 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4.3E-156 100-954 855 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
97-963 867 1
887-1027 141 -1
738-869 132 -1
907-1026 120 -1
917-1027 111 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300639 2.2E-138 1 461.1 0.6786758 261-957 697 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)