Transcript : dd_Smed_v6_276_0_1 S. mediterranea

Length  872     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067183.1, clone H.89.3e unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000962.2 Homo sapiens ribosomal protein L7 1.0E-78 107-820 714 1
NP_035421.2 Mus musculus ribosomal protein L7 4.0E-78 98-820 723 1
XP_003745534.1 Metaseiulus occidentalis 60S ribosomal protein L7-like 9.0E-95 101-823 723 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00634 PROSITE IPR018038 Ribosomal protein L30 signature. 0.0 401-496 96 1
PF08079 PFAM IPR012988 Ribosomal L30 N-terminal domain 7.7E-10 128-337 210 1
PF00327 PFAM IPR016082 Ribosomal protein L30p/L7e 3.5E-20 344-496 153 1
PTHR11524:SF6 PANTHER 60S RIBOSOMAL PROTEIN L7 2.8E-126 101-820 720 1
PTHR11524 PANTHER 60S RIBOSOMAL PROTEIN L7 2.8E-126 101-820 720 1
SSF55129 SSF IPR016082 Ribosomal protein L30p/L7e 1.27E-56 344-817 474 1
G3DSA:3.30.1390.20 GENE3D IPR016082   3.7E-34 347-511 165 1
G3DSA:3.30.1390.20 GENE3D IPR016082   3.7E-34 704-817 114 1
TIGR01310 TIGRFAMs IPR005998 L7: 60S ribosomal protein L7 2.9E-87 122-817 696 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
98-823 726 1
719-871 153 -1
312-419 108 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300740 6.0E-115 2 384.0 0.8165138 108-819 712 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)