Transcript : dd_Smed_v6_2760_0_1 S. mediterranea

Length  2066     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001033984.1 Drosophila melanogaster CG33966 gene product from transcript CG33966-RA 1.0E-25 1064-1975 912 1
XP_005175583.1 Musca domestica alpha-tocopherol transfer protein-like 4.0E-37 1040-1975 936 1
XP_004929248.1 Bombyx mori clavesin-1-like 7.0E-32 1031-1891 861 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.525.10 GENE3D IPR001251 Phosphatidylinositol Transfer Protein Sec14p 2.9E-43 1076-1852 777 1
SM01100 SMART IPR011074 CRAL/TRIO, N-terminal domain 8.8E-4 1163-1237 75 1
SSF52087 SSF IPR001251 CRAL/TRIO domain 5.89E-35 1319-1840 522 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1757-1783 27 1
SSF46938 SSF IPR011074 CRAL/TRIO N-terminal domain 5.49E-14 1040-1252 213 1
PTHR10174:SF110 PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-LIKE 2.9E-76 1037-1963 927 1
PF00650 PFAM IPR001251 CRAL/TRIO domain 1.6E-24 1319-1783 465 1
PTHR10174 PANTHER RETINALDEHYDE BINDING PROTEIN-RELATED 2.9E-76 1037-1963 927 1
SM00516 SMART IPR001251 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) 6.6E-11 1319-1789 471 1
PS50191 PROFILE IPR001251 CRAL-TRIO lipid binding domain profile. 13.359 1298-1798 501 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1172-1237 66 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1556-1618 63 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
1025-1987 963 1
1240-1461 222 -1
730-861 132 -1
1311-1418 108 -1
1483-1584 102 -1
967-1068 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)