Contig : dd_Smed_v6_2760_0_1 S. mediterranea

Id  dd_Smed_v6_2760_0_1 Length  2066    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001033984.1 Drosophila melanogaster CG33966 gene product from transcript CG33966-RA 1.0E-25 1064-1975 912 1
XP_005175583.1 Musca domestica alpha-tocopherol transfer protein-like 4.0E-37 1040-1975 936 1
XP_004929248.1 Bombyx mori clavesin-1-like 7.0E-32 1031-1891 861 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.525.10 GENE3D IPR001251 Phosphatidylinositol Transfer Protein Sec14p 2.9E-43 1076-1852 777 1
SM01100 SMART IPR011074 CRAL/TRIO, N-terminal domain 8.8E-4 1163-1237 75 1
SSF52087 SSF IPR001251 CRAL/TRIO domain 5.89E-35 1319-1840 522 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1757-1783 27 1
SSF46938 SSF IPR011074 CRAL/TRIO N-terminal domain 5.49E-14 1040-1252 213 1
PTHR10174:SF110 PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-LIKE 2.9E-76 1037-1963 927 1
PF00650 PFAM IPR001251 CRAL/TRIO domain 1.6E-24 1319-1783 465 1
PTHR10174 PANTHER RETINALDEHYDE BINDING PROTEIN-RELATED 2.9E-76 1037-1963 927 1
SM00516 SMART IPR001251 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) 6.6E-11 1319-1789 471 1
PS50191 PROFILE IPR001251 CRAL-TRIO lipid binding domain profile. 13.359 1298-1798 501 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1172-1237 66 1
PR00180 PRINTS IPR001071 Cellular retinaldehyde-binding protein signature 5.6E-10 1556-1618 63 1

6 ORFs

Contig Location Length Strand Sequence
1025-1987 963 1
1240-1461 222 -1
730-861 132 -1
1311-1418 108 -1
1483-1584 102 -1
967-1068 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)