Transcript : dd_Smed_v6_269_0_1 S. mediterranea

Length  845     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067184.1, clone HB.18.2d unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000996.2 Homo sapiens ribosomal protein S3 7.0E-109 111-782 672 1
NP_036182.1 Mus musculus ribosomal protein S3 3.0E-108 111-782 672 1
NP_476632.1 Drosophila melanogaster Ribosomal protein S3 1.0E-101 96-782 687 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54814 SSF IPR009019 Prokaryotic type KH domain (KH-domain type II) 1.09E-21 138-395 258 1
G3DSA:3.30.1140.32 GENE3D IPR001351   8.0E-29 381-668 288 1
G3DSA:3.30.300.20 GENE3D IPR015946   2.6E-6 162-356 195 1
PF00189 PFAM IPR001351 Ribosomal protein S3, C-terminal domain 3.6E-15 414-662 249 1
SSF54821 SSF IPR001351 Ribosomal protein S3 C-terminal domain 7.19E-26 378-668 291 1
PTHR11760 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 1.5E-122 69-779 711 1
PS50823 PROFILE IPR004044 Type-2 KH domain profile. 10.381 162-374 213 1
PF07650 PFAM IPR004044 KH domain 5.9E-11 159-377 219 1
TIGR01008 TIGRFAMs IPR005703 rpsC_E_A: ribosomal protein S3 1.5E-62 123-728 606 1
PS00548 PROSITE IPR018280 Ribosomal protein S3 signature. 0.0 540-647 108 1
PTHR11760:SF9 PANTHER 40S RIBOSOMAL PROTEIN S3 1.5E-122 69-779 711 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
96-797 702 1
528-677 150 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300901 2.5E-123 3 411.2 0.7822485 135-795 661 1

Expression Information

Planmine Rnai Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)