Transcript : dd_Smed_v6_2690_0_1 S. mediterranea

Length  1619     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_084348.1 Mus musculus phospholipase B1 3.0E-64 294-1277 984 1
NP_694566.4 Homo sapiens phospholipase B1 1.0E-59 339-1280 942 1
XP_006820484.1 Saccoglossus kowalevskii phospholipase B1, membrane-associated-like 2.0E-84 297-1277 981 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.1110 GENE3D IPR013831   4.6E-20 375-1175 801 1
PTHR21325 PANTHER PHOSPHOLIPASE B, PLB1 3.2E-112 300-1277 978 1
SSF52266 SSF SGNH hydrolase 1.38E-20 369-470 102 1
PF00657 PFAM IPR001087 GDSL-like Lipase/Acylhydrolase 4.8E-20 375-1157 783 1
SSF52266 SSF SGNH hydrolase 1.38E-20 585-1172 588 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
45-1280 1236 1
317-562 246 -1
614-844 231 -1
966-1127 162 -1
51-197 147 -1
1489-1617 129 -1
370-498 129 -1
418-531 114 1
1457-1570 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314942 2.7E-127 3 425.8 0.6084002 291-1275 985 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)