Contig : dd_Smed_v6_2690_0_1 S. mediterranea

Id  dd_Smed_v6_2690_0_1 Length  1619    Open in Genome Browser

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Planmine Rnai Result Displayer

Planmine Anatomy Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_084348.1 Mus musculus phospholipase B1 3.0E-64 294-1277 984 1
NP_694566.4 Homo sapiens phospholipase B1 1.0E-59 339-1280 942 1
XP_006820484.1 Saccoglossus kowalevskii phospholipase B1, membrane-associated-like 2.0E-84 297-1277 981 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.50.1110 GENE3D IPR013831   4.6E-20 375-1175 801 1
PTHR21325 PANTHER PHOSPHOLIPASE B, PLB1 3.2E-112 300-1277 978 1
SSF52266 SSF SGNH hydrolase 1.38E-20 369-470 102 1
PF00657 PFAM IPR001087 GDSL-like Lipase/Acylhydrolase 4.8E-20 375-1157 783 1
SSF52266 SSF SGNH hydrolase 1.38E-20 585-1172 588 1

9 ORFs

Contig Location Length Strand Sequence
45-1280 1236 1
317-562 246 -1
614-844 231 -1
966-1127 162 -1
51-197 147 -1
1489-1617 129 -1
370-498 129 -1
418-531 114 1
1457-1570 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314942 2.7E-127 3 425.8 0.6084002 291-1275 985 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)