Transcript : dd_Smed_v6_267_0_1 S. mediterranea

Length  1208     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066907.1, clone H.17.7f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_780713.1 Strongylocentrotus purpuratus cathepsin L1 6.0E-131 145-1125 981 1
XP_006813635.1 Saccoglossus kowalevskii cathepsin L1-like 1.0E-124 190-1125 936 1
XP_008308098.1 Cynoglossus semilaevis cathepsin L1-like 2.0E-123 211-1125 915 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00139 PROSITE IPR000169 Eukaryotic thiol (cysteine) proteases cysteine active site. 0.0 532-564 33 1
SM00645 SMART IPR000668 Papain family cysteine protease 9.9E-125 478-1119 642 1
PF08246 PFAM IPR013201 Cathepsin propeptide inhibitor domain (I29) 2.9E-12 217-393 177 1
SM00848 SMART IPR013201 Cathepsin propeptide inhibitor domain (I29) 4.8E-24 217-393 177 1
PS00639 PROSITE IPR025660 Eukaryotic thiol (cysteine) proteases histidine active site. 0.0 958-987 30 1
PTHR12411 PANTHER IPR013128 CYSTEINE PROTEASE FAMILY C1-RELATED 1.5E-166 127-1122 996 1
SSF54001 SSF Cysteine proteinases 6.1E-119 193-1119 927 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 2.7E-10 964-993 30 1
G3DSA:3.90.70.10 GENE3D Cysteine proteinases 3.2E-123 211-1122 912 1
PS00640 PROSITE IPR025661 Eukaryotic thiol (cysteine) proteases asparagine active site. 0.0 1009-1065 57 1
PF00112 PFAM IPR000668 Papain family cysteine protease 3.1E-84 478-1116 639 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 2.7E-10 1009-1026 18 1
PTHR12411:SF57 PANTHER CATHEPSIN L2 1.5E-166 127-1122 996 1
PR00705 PRINTS IPR000668 Papain cysteine protease (C1) family signature 2.7E-10 532-576 45 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
127-1125 999 1
436-591 156 -1
209-361 153 1
716-853 138 1
887-1015 129 1
226-345 120 -1

7 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF342868 6.0E-103 1 344.2 0.7433775 225-1122 898 1
TF318600 1.5E-47 1 162.1 0.4379139 228-756 529 1
TF314550 2.9E-93 1 312.3 0.6986755 231-1074 844 1
TF328985 2.2E-90 1 303.7 0.740894 231-1125 895 1
TF331594 1.1E-71 1 241.5 0.7110927 240-1098 859 1
TF319730 4.1E-68 1 229.6 0.678808 285-1104 820 1
TF337736 3.9E-44 1 150.1 0.56456953 378-1059 682 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)