Transcript : dd_Smed_v6_2674_0_1 S. mediterranea

Length  1930     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_766515.2 Mus musculus collagen, type VI, alpha 6 4.0E-30 121-1743 1623 1
NP_694996.5 Homo sapiens collagen type VI alpha 5 2.0E-29 121-1743 1623 1
XP_008110968.1 Anolis carolinensis collagen alpha-6(VI) chain-like 7.0E-39 115-1749 1635 1

19 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1243-1293 51 1
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1360-1401 42 1
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1549-1572 24 1
PS50234 PROFILE IPR002035 VWFA domain profile. 24.588 121-627 507 1
PTHR22992 PANTHER VON WILENBRAND FACTOR RELATED 2.8E-79 85-1818 1734 1
SSF53300 SSF IPR002035 vWA-like 2.49E-48 1216-1743 528 1
SSF53300 SSF IPR002035 vWA-like 1.83E-39 100-645 546 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 3.3E-35 124-597 474 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 1.4E-40 1246-1734 489 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 1.5E-10 691-1158 468 1
PS50234 PROFILE IPR002035 VWFA domain profile. 27.511 1246-1755 510 1
G3DSA:3.40.50.410 GENE3D IPR002035   1.9E-47 1228-1806 579 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 0.14 685-1197 513 1
G3DSA:3.40.50.410 GENE3D IPR002035   5.6E-15 673-1200 528 1
PS50234 PROFILE IPR002035 VWFA domain profile. 13.916 691-1194 504 1
SSF53300 SSF IPR002035 vWA-like 6.2E-18 676-1206 531 1
G3DSA:3.40.50.410 GENE3D IPR002035   2.6E-40 100-645 546 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 1.2E-29 115-621 507 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 1.1E-36 1240-1758 519 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
13-1839 1827 1
294-527 234 -1
440-598 159 -1
1504-1635 132 -1
640-765 126 -1
585-707 123 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318242 5.2E-48 1 162.0 0.4031088 963-1740 778 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)