Contig : dd_Smed_v6_2674_0_1 S. mediterranea

Id  dd_Smed_v6_2674_0_1 Length  1930    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_766515.2 Mus musculus collagen, type VI, alpha 6 4.0E-30 121-1743 1623 1
NP_694996.5 Homo sapiens collagen, type VI, alpha 5 2.0E-29 121-1743 1623 1
XP_008110968.1 Anolis carolinensis collagen alpha-6(VI) chain-like 7.0E-39 115-1749 1635 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1243-1293 51 1
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1360-1401 42 1
PR00453 PRINTS Von Willebrand factor type A domain signature 3.62E-8 1549-1572 24 1
PS50234 PROFILE IPR002035 VWFA domain profile. 24.588 121-627 507 1
PTHR22992 PANTHER VON WILENBRAND FACTOR RELATED 2.8E-79 85-1818 1734 1
SSF53300 SSF IPR002035 vWA-like 2.49E-48 1216-1743 528 1
SSF53300 SSF IPR002035 vWA-like 1.83E-39 100-645 546 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 3.3E-35 124-597 474 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 1.4E-40 1246-1734 489 1
PF00092 PFAM IPR002035 von Willebrand factor type A domain 1.5E-10 691-1158 468 1
PS50234 PROFILE IPR002035 VWFA domain profile. 27.511 1246-1755 510 1
G3DSA:3.40.50.410 GENE3D IPR002035   1.9E-47 1228-1806 579 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 0.14 685-1197 513 1
G3DSA:3.40.50.410 GENE3D IPR002035   5.6E-15 673-1200 528 1
PS50234 PROFILE IPR002035 VWFA domain profile. 13.916 691-1194 504 1
SSF53300 SSF IPR002035 vWA-like 6.2E-18 676-1206 531 1
G3DSA:3.40.50.410 GENE3D IPR002035   2.6E-40 100-645 546 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 1.2E-29 115-621 507 1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 1.1E-36 1240-1758 519 1

6 ORFs

Contig Location Length Strand Sequence
13-1839 1827 1
294-527 234 -1
440-598 159 -1
1504-1635 132 -1
640-765 126 -1
585-707 123 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318242 5.2E-48 1 162.0 0.4031088 963-1740 778 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)