Transcript : dd_Smed_v6_2673_0_1 S. mediterranea

Length  4186     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066060.1, clone H.22.2h(T3) unknown mRNA sequence
AY967529.1, clone HE.3.11E mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_649461.2 Drosophila melanogaster Contactin 1.0E-114 170-3880 3711 1
NP_032805.2 Mus musculus contactin 3 1.0E-86 677-3697 3021 1
NP_005067.1 Homo sapiens contactin 2 (axonal) 1.0E-84 680-3697 3018 1

50 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF48726 SSF Immunoglobulin 2.54E-10 1391-1645 255 1
G3DSA:2.60.40.10 GENE3D IPR013783 Immunoglobulins 1.3E-20 1943-2242 300 1
SM00060 SMART IPR003961 Fibronectin type 3 domain 0.05 3239-3526 288 1
SM00060 SMART IPR003961 Fibronectin type 3 domain 13.0 2915-3190 276 1
PS50853 PROFILE IPR003961 Fibronectin type-III domain profile. 12.262 2570-2890 321 1
SSF49265 SSF IPR003961 Fibronectin type III 7.55E-24 3245-3847 603 1
PF00041 PFAM IPR003961 Fibronectin type III domain 1.3E-7 3584-3838 255 1
PF00041 PFAM IPR003961 Fibronectin type III domain 1.8E-6 3245-3532 288 1
SM00060 SMART IPR003961 Fibronectin type 3 domain 0.29 2570-2863 294 1
SM00060 SMART IPR003961 Fibronectin type 3 domain 0.22 3572-3829 258 1
G3DSA:2.60.40.10 GENE3D IPR013783 Immunoglobulins 1.1E-8 683-982 300 1
PTHR10489 PANTHER CELL ADHESION MOLECULE 9.3E-146 680-3877 3198 1
PS50835 PROFILE IPR007110 Ig-like domain profile. 11.515 1640-1933 294 1
PS50835 PROFILE IPR007110 Ig-like domain profile. 14.002 1943-2239 297 1
PF07679 PFAM IPR013098 Immunoglobulin I-set domain 1.7E-5 2279-2560 282 1
PF07679 PFAM IPR013098 Immunoglobulin I-set domain 4.8E-11 1640-1924 285 1
PF07679 PFAM IPR013098 Immunoglobulin I-set domain 4.0E-15 1961-2242 282 1
PF13895 PFAM Immunoglobulin domain 3.7E-4 722-982 261 1
PF13895 PFAM Immunoglobulin domain 0.015 1385-1591 207 1
PS50835 PROFILE IPR007110 Ig-like domain profile. 8.375 683-979 297 1
PS50853 PROFILE IPR003961 Fibronectin type-III domain profile. 11.161 2912-3220 309 1
G3DSA:2.60.40.10 GENE3D IPR013783 Immunoglobulins 3.1E-11 2264-2578 315 1
PS50853 PROFILE IPR003961 Fibronectin type-III domain profile. 14.912 3236-3553 318 1
SM00409 SMART IPR003599 Immunoglobulin 0.0019 1376-1630 255 1
SM00409 SMART IPR003599 Immunoglobulin 0.066 713-1321 609 1
SM00409 SMART IPR003599 Immunoglobulin 1.3E-8 1964-2245 282 1
SM00409 SMART IPR003599 Immunoglobulin 2.9E-4 1658-1930 273 1
SSF48726 SSF Immunoglobulin 2.32E-14 2285-2572 288 1
SSF49265 SSF IPR003961 Fibronectin type III 7.23E-22 2621-3235 615 1
SSF48726 SSF Immunoglobulin 4.04E-16 1619-1924 306 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

11 ORFs

Contig Location Length Strand Sequence
62-4003 3942 1
3780-3968 189 1
2791-2970 180 -1
948-1118 171 1
2055-2210 156 1
2931-3077 147 1
717-836 120 1
3315-3431 117 -1
2509-2622 114 1
2543-2656 114 -1
2008-2109 102 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351103 5.2E-179 2 596.4 0.7570473 684-3852 3169 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)