Transcript : dd_Smed_v6_2648_0_1 S. mediterranea

Length  2360     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005338.1 Homo sapiens heat shock protein family A (Hsp70) member 5 0.0 192-2063 1872 1
NP_727563.1 Drosophila melanogaster Heat shock 70-kDa protein cognate 3 0.0 219-2063 1845 1
NP_071705.3 Mus musculus heat shock protein 5 0.0 192-2063 1872 1

27 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF100920 SSF IPR029047 Heat shock protein 70kD (HSP70), peptide-binding domain 1.03E-59 1377-1841 465 1
PS00329 PROSITE IPR018181 Heat shock hsp70 proteins family signature 2. 0.0 810-848 39 1
PS00297 PROSITE IPR018181 Heat shock hsp70 proteins family signature 1. 0.0 234-254 21 1
PTHR19375 PANTHER HEAT SHOCK PROTEIN 70KDA 0.0 219-2072 1854 1
G3DSA:3.30.420.40 GENE3D   2.9E-65 579-821 243 1
G3DSA:3.30.420.40 GENE3D   2.9E-65 225-368 144 1
G3DSA:3.30.420.40 GENE3D   2.7E-38 825-908 84 1
PF00012 PFAM IPR013126 Hsp70 protein 4.9E-253 225-2051 1827 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 1.3E-29 912-1151 240 1
SSF53067 SSF Actin-like ATPase domain 8.09E-69 219-770 552 1
SSF100934 SSF IPR029048 Heat shock protein 70kD (HSP70), C-terminal subdomain 1.57E-19 1824-2069 246 1
G3DSA:2.60.34.10 GENE3D IPR029047 Substrate Binding Domain Of DNAk; Chain A, domain 1 2.2E-59 1389-1766 378 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 222-260 39 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 306-341 36 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 375-398 24 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 636-695 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 1383-1439 57 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 1212-1259 48 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 828-857 30 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 1308-1367 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 2.7E-82 1626-1673 48 1
G3DSA:3.30.420.40 GENE3D   2.7E-38 1167-1292 126 1
PS01036 PROSITE IPR018181 Heat shock hsp70 proteins family signature 3. 0.0 1221-1262 42 1
G3DSA:3.30.30.30 GENE3D   9.8E-32 372-554 183 1
G3DSA:1.20.1270.10 GENE3D IPR029048   5.3E-33 1770-2078 309 1
SSF53067 SSF Actin-like ATPase domain 4.14E-65 789-1364 576 1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 2.0E-8 574-705 132 -1

Genomics

Predicted Gene Displayer

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Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
117-2126 2010 1
1004-1213 210 -1
1577-1759 183 -1
2050-2193 144 1
2172-2315 144 1
2231-2338 108 1

7 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105044 0.0 3 1346.2 0.8165254 216-2142 1927 1
TF105046 2.4E-254 3 845.7 0.7872881 219-2076 1858 1
TF354208 4.5E-297 3 987.7 0.78474575 222-2073 1852 1
TF105045 3.9E-171 3 570.5 0.62838984 222-1704 1483 1
TF105047 1.0E-138 3 462.8 0.48347458 225-1365 1141 1
TF105043 1.8E-93 3 312.9 0.4822034 225-1362 1138 1
TF105048 8.1E-70 3 234.6 0.47838983 234-1362 1129 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)