Transcript : dd_Smed_v6_26484_0_6 S. mediterranea

Length  422     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002412745.1 Ixodes scapularis reverse transcriptase, putative 1.0E-29 2-412 411 1
XP_003373115.1 Trichinella spiralis retrovirus-related protein 4.0E-17 2-412 411 1
XP_002431492.1 Pediculus humanus corporis reverse transcriptase, putative 2.0E-12 2-418 417 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 3.1E-19 23-400 378 1
PTHR19446:SF314 PANTHER SUBFAMILY NOT NAMED 2.4E-30 2-385 384 1
SSF56672 SSF DNA/RNA polymerases 7.21E-8 143-379 237 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 2.4E-30 2-385 384 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 15.005 2-421 420 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
2-421 420 1
58-261 204 -1
3-185 183 -1
274-420 147 -1
201-344 144 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330254 1.0E-24 2 85.0 0.9123223 9-393 385 1
TF321903 3.2E-10 2 36.9 0.91943127 9-396 388 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)