Contig : dd_Smed_v6_26484_0_6 S. mediterranea

Id  dd_Smed_v6_26484_0_6 Length  422    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002412745.1 Ixodes scapularis reverse transcriptase, putative 1.0E-29 2-412 411 1
XP_003373115.1 Trichinella spiralis retrovirus-related protein 4.0E-17 2-412 411 1
XP_002431492.1 Pediculus humanus corporis reverse transcriptase, putative 2.0E-12 2-418 417 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 3.1E-19 23-400 378 1
PTHR19446:SF314 PANTHER SUBFAMILY NOT NAMED 2.4E-30 2-385 384 1
SSF56672 SSF DNA/RNA polymerases 7.21E-8 143-379 237 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 2.4E-30 2-385 384 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 15.005 2-421 420 1

5 ORFs

Contig Location Length Strand Sequence
2-421 420 1
58-261 204 -1
3-185 183 -1
274-420 147 -1
201-344 144 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330254 1.0E-24 2 85.0 0.9123223 9-393 385 1
TF321903 3.2E-10 2 36.9 0.91943127 9-396 388 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)