Contig : dd_Smed_v6_2646_0_1 S. mediterranea

Id  dd_Smed_v6_2646_0_1 Length  1488    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477225.1 Drosophila melanogaster Peptidylglycine-alpha-hydroxylating monooxygenase 2.0E-64 167-1036 870 1
NP_001280352.1 Acyrthosiphon pisum peptidylglycine alpha-hydroxylating monooxygenase 7.0E-70 161-1078 918 1
XP_002432577.1 Pediculus humanus corporis peptidyl-glycine alpha-amidating monooxygenase 1 precursor, putative 7.0E-67 161-1072 912 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.60.120.230 GENE3D IPR014784   8.1E-40 599-970 372 1
PR00790 PRINTS IPR000720 Peptidyl-glycine alpha-amidating monooxygenase signature 7.17E-16 764-820 57 1
PF01082 PFAM IPR000323 Copper type II ascorbate-dependent monooxygenase, N-terminal domain 4.3E-25 158-511 354 1
PF03712 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain 6.0E-39 587-970 384 1
PS00085 PROSITE IPR014783 Copper type II, ascorbate-dependent monooxygenases signature 2. 0.0 689-724 36 1
PR00790 PRINTS IPR000720 Peptidyl-glycine alpha-amidating monooxygenase signature 7.17E-16 899-955 57 1
PR00790 PRINTS IPR000720 Peptidyl-glycine alpha-amidating monooxygenase signature 7.17E-16 248-310 63 1
G3DSA:2.60.120.310 GENE3D IPR000323   4.4E-37 146-589 444 1
SSF49742 SSF IPR008977 PHM/PNGase F 3.24E-44 587-973 387 1
PTHR10680 PANTHER PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE 2.4E-116 71-1036 966 1
SSF49742 SSF IPR008977 PHM/PNGase F 1.15E-32 143-574 432 1

5 ORFs

Contig Location Length Strand Sequence
104-1252 1149 1
994-1161 168 -1
267-419 153 -1
918-1049 132 1
618-722 105 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF320698 1.1E-58 2 198.4 0.5369624 165-963 799 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)