Contig : dd_Smed_v6_260_0_1 S. mediterranea

Id  dd_Smed_v6_260_0_1 Length  730    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477034.1 Drosophila melanogaster twinstar 8.0E-19 206-574 369 1
XP_007363778.1 Dichomitus squalens LYAD-421 SS1 actin depolymerizing factor 1.0E-23 206-571 366 1
XP_001581272.1 Trichomonas vaginalis G3 Cofilin/tropomyosin-type actin-binding protein 1.0E-21 212-571 360 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.20.10 GENE3D IPR029006 Severin 7.6E-33 206-607 402 1
PS51263 PROFILE IPR002108 ADF-H domain profile. 30.52 212-610 399 1
SSF55753 SSF Actin depolymerizing proteins 1.55E-30 206-607 402 1
PF00241 PFAM IPR002108 Cofilin/tropomyosin-type actin-binding protein 2.3E-30 230-610 381 1
PR00006 PRINTS IPR017904 Cofilin/destrin family signature 3.24E-6 452-514 63 1
PR00006 PRINTS IPR017904 Cofilin/destrin family signature 3.24E-6 518-565 48 1
PTHR11913 PANTHER IPR017904 COFILIN-RELATED 5.4E-40 206-607 402 1
SM00102 SMART IPR002108 Actin depolymerisation factor/cofilin -like domains 1.1E-30 230-610 381 1

2 ORFs

Contig Location Length Strand Sequence
206-613 408 1
418-546 129 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313142 1.3E-44 2 151.9 0.5561644 207-612 406 1
TF328601 7.4E-13 2 47.4 0.5068493 222-591 370 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)